Axodine

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Axodines
Actinophryid.jpg
An actinophryid
Scientific classification Red Pencil Icon.png
Kingdom: Chromista
Phylum: Gyrista
Subphylum: Ochrophytina
Class: Dictyochophyceae
Subclass: Pedinellia
Cavalier-Smith 1986 stat. nov. 2017 [1]
Genera
Synonyms
  • Actinochrysea Cavalier-Smith 1995 [2]
  • Axodines Patterson, 1994 [3]

The axodines are a group of unicellular stramenopiles that includes silicoflagellate and rhizochromulinid algae, actinomonad heterotrophic flagellates and actinophryid heliozoa. Alternative classifications treat the dictyochophytes as heterokont algae, or as Chrysophyceae. [4] Other overlapping taxonomic concepts include the Actinochrysophyceae, Actinochrysea or Dictyochophyceae sensu lato. The grouping was proposed on the basis of ultrastructural similarities, and is consistent with subsequent molecular comparisons. [5]

Contents

The Axodine grouping was unusual in breaking with the traditions of botanical and protozoological taxonomy to include the actinophryid heliozoa as part of the lineage that also contained the pedinellid algae along with colorless relatives such as Actinomonas, Pteridomonas, and Ciliophrys; the axodines further included the silicoflagellates, and Rhizochromulinales. [3] This followed a growing consensus that the actinophryid heliozoa were not related to other types of heliozoa. [6] [7] [8]

Characteristics

The name points to a character that is deemed to be synapomorphic for the group: that is the microtubular arrays that extend from the surface of the nucleus. Many flagellated forms have a single emergent flagellum, that lacks the root structure found in related chrysophytes.

Classification and history

Diagram by Mikrjukov and Patterson to show the relationships of, and within, axodines, together with the proposed synapomorphies of the clades. Mikrjukov Patterson 2001 actinodines.jpg
Diagram by Mikrjukov and Patterson to show the relationships of, and within, axodines, together with the proposed synapomorphies of the clades.
Axodine.jpg

The traditional botanical treatment of the group follows

Order Dictyochales

The most notable group is the silicoflagellates, marine plankton that form siliceous skeletons and are well known as fossils.

Order Pedinellales

Most other axodines form a group variously called the pedinellids.

Order Rhizochromulinales

In addition to the silicoflagellates and actinodines, the marine amoeboid Rhizochromulina marina is included here based on the structure of its zoospores. It is considered closer to the latter group than the former.

Related Research Articles

<span class="mw-page-title-main">Actinophryid</span> Order of algae

The actinophryids are an order of heliozoa, a polyphyletic array of stramenopiles, having a close relationship with pedinellids and Ciliophrys. They are common in fresh water and occasionally found in marine and soil habitats. Actinophryids are unicellular and roughly spherical in shape, with many axopodia that radiate outward from the cell body. Axopodia are a type of pseudopodia that are supported by hundreds of microtubules arranged in interlocking spirals and forming a needle-like internal structure or axoneme. Small granules, extrusomes, that lie under the membrane of the body and axopodia capture flagellates, ciliates and small metazoa that make contact with the arms.

<span class="mw-page-title-main">Flagellate</span> Group of protists with at least one whip-like appendage

A flagellate is a cell or organism with one or more whip-like appendages called flagella. The word flagellate also describes a particular construction characteristic of many prokaryotes and eukaryotes and their means of motion. The term presently does not imply any specific relationship or classification of the organisms that possess flagella. However, the term "flagellate" is included in other terms which are more formally characterized.

<span class="mw-page-title-main">Percolozoa</span> Phylum of Excavata

The Percolozoa are a group of colourless, non-photosynthetic Excavata, including many that can transform between amoeboid, flagellate, and cyst stages.

<span class="mw-page-title-main">Stramenopile</span> Clade of eukaryotes

Stramenopile is a clade of organisms distinguished by the presence of stiff tripartite external hairs. In most species, the hairs are attached to flagella, in some they are attached to other areas of the cellular surface, and in some they have been secondarily lost. Stramenopiles represent one of the three major clades in the SAR supergroup, along with Alveolata and Rhizaria.

<span class="mw-page-title-main">Radiolaria</span> Phylum of single-celled organisms

The Radiolaria, also called Radiozoa, are protozoa of diameter 0.1–0.2 mm that produce intricate mineral skeletons, typically with a central capsule dividing the cell into the inner and outer portions of endoplasm and ectoplasm. The elaborate mineral skeleton is usually made of silica. They are found as zooplankton throughout the global ocean. As zooplankton, radiolarians are primarily heterotrophic, but many have photosynthetic endosymbionts and are, therefore, considered mixotrophs. The skeletal remains of some types of radiolarians make up a large part of the cover of the ocean floor as siliceous ooze. Due to their rapid change as species and intricate skeletons, radiolarians represent an important diagnostic fossil found from the Cambrian onwards.

<span class="mw-page-title-main">Dictyochales</span> Order of single-celled organisms

Dictyochales are a small group of unicellular heterokont algae, found in marine environments.

<span class="mw-page-title-main">Pedinellales</span> Order of single-celled organisms

Pedinellales is a group of single-celled algae found in both marine environments and freshwater.

<span class="mw-page-title-main">Chlorarachniophyte</span> Group of algae

The chlorarachniophytes are a small group of exclusively marine algae widely distributed in tropical and temperate waters. They are typically mixotrophic, ingesting bacteria and smaller protists as well as conducting photosynthesis. Normally they have the form of small amoebae, with branching cytoplasmic extensions that capture prey and connect the cells together, forming a net. They may also form flagellate zoospores, which characteristically have a single subapical flagellum that spirals backwards around the cell body, and walled coccoid cells.

<span class="mw-page-title-main">Golden algae</span> Class of algae

The Chrysophyceae, usually called chrysophytes, chrysomonads, golden-brown algae or golden algae are a large group of algae, found mostly in freshwater. Golden algae is also commonly used to refer to a single species, Prymnesium parvum, which causes fish kills.

<span class="mw-page-title-main">Heterokont</span> Infrakingdom of protist eukaryotes

Heterokonts are a group of protists. The group is a major line of eukaryotes. Most are algae, ranging from the giant multicellular kelp to the unicellular diatoms, which are a primary component of plankton. Other notable members of the Stramenopiles include the (generally) parasitic oomycetes, including Phytophthora, which caused the Great Famine of Ireland, and Pythium, which causes seed rot and damping off.

<span class="mw-page-title-main">Thomas Cavalier-Smith</span> British evolutionary biologist (1942–2021)

Thomas (Tom) Cavalier-Smith, FRS, FRSC, NERC Professorial Fellow, was a professor of evolutionary biology in the Department of Zoology, at the University of Oxford.

<span class="mw-page-title-main">Cercozoa</span> Group of single-celled organisms

Cercozoa is a phylum of diverse single-celled eukaryotes. They lack shared morphological characteristics at the microscopic level, and are instead defined by molecular phylogenies of rRNA and actin or polyubiquitin. They were the first major eukaryotic group to be recognized mainly through molecular phylogenies. They are the natural predators of many species of microbacteria and Archea. They are closely related to the phylum Retaria, comprising amoeboids that usually have complex shells, and together form a supergroup called Rhizaria.

<span class="mw-page-title-main">Phaeodarea</span> Class of protists

Phaeodarea, or Phaeodaria, is a group of amoeboid cercozoan organisms. They are traditionally considered radiolarians, but in molecular trees do not appear to be close relatives of the other groups, and are instead placed among the Cercozoa. They are distinguished by the structure of their central capsule and by the presence of a phaeodium, an aggregate of waste particles within the cell.

<span class="mw-page-title-main">Bicosoecida</span> Order of protists

Bicosoecida (ICZN) or Bicosoecales/Bicoecea (ICBN) is an order of Bikosea, a small group of unicellular flagellates, included among the heterokonts. Informally known as bicosoecids, they are a small group of unicellular flagellates. The cells are free-living, with no chloroplasts, and in some genera are encased in a lorica.

<span class="mw-page-title-main">Monadofilosa</span> Group of protists

Monadofilosa is a grouping of Cercozoa. These organisms are single-celled amoeboid protists.

<span class="mw-page-title-main">David J. Patterson</span>

David Joseph Patterson is a Northern Irish taxonomist specializing in protozoa and the use of taxonomy in biodiversity informatics.

<i>Thaumatomastix</i> Genus of single-celled organisms

Thaumatomastix is a protist genus of the order Thaumatomonadida, within the phylum Cercozoa and the class Imbricatea. Its species are aquatic, feeding on algae and appearing in waters of a wide range of temperatures and salinities, and are 15-50 micrometers long. They can interchange between flagellated and amoeboid forms, and are notable for being covered in both spiny and flattened siliceous scales.

Kiitoksia is a genus of aquatic protist. The taxonomic position of the genus is still uncertain and it has not found a robust location in any subgroup.

<span class="mw-page-title-main">Amoeba</span> Polyphyletic group of unicellular eukaryotes with the ability to shapeshift

An amoeba, often called an amoeboid, is a type of cell or unicellular organism which has the ability to alter its shape, primarily by extending and retracting pseudopods. Amoebae do not form a single taxonomic group; instead, they are found in every major lineage of eukaryotic organisms. Amoeboid cells occur not only among the protozoa, but also in fungi, algae, and animals.

<span class="mw-page-title-main">Ultrastructural identity</span>

Ultrastructural identity is a concept in biology. It asserts that evolutionary lineages of eukaryotes in general and protists in particular can be distinguished by complements and arrangements of cellular organelles. These ultrastructural components can be visualized by electron microscopy.

References

  1. Cavalier-Smith, Thomas (2017). "Kingdom Chromista and its eight phyla: a new synthesis emphasising periplastid protein targeting, cytoskeletal and periplastid evolution, and ancient divergences". Protoplasma. 255 (1): 297–357. doi:10.1007/s00709-017-1147-3. PMC   5756292 . PMID   28875267.
  2. Cavalier-Smith, T.; Chao, E.E.; Allsopp, M.T.E.P. (1995). "Ribosomal RNA evidence for chloroplast loss within Heterokonta: pedinellid relationships and a revised classification of ochristan algae". Arch. Protistenkd. 145 (3–4): 209–220. doi:10.1016/S0003-9365(11)80316-7.
  3. 1 2 Mikrjukov KA, Patterson DJ (1 February 2001). "Taxonomy and phylogeny of Heliozoa. III. Actinophryids" (PDF). Acta Protozoologica. 40 (1): 3–26.
  4. Sandgren, C.D.; Smol, J.P.; Kristiansen, J. (1995). Chrysophyte Algae: Ecology, Phylogeny and Development. Cambridge University Press. p. 49. ISBN   9780521462600 . Retrieved 2014-12-12.
  5. Nikolaev, S.I., Berney, C., Fahrni, J., Bolivar, I.,Polet, S., Mylnikov, A.P., Aleshin, V.V., Petrov, N. B., Pawlowski, J. 2004. The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes. Proceedings of the National Academy of Sciences 101 (21) 8066-8071; DOI: 10.1073/pnas.0308602101
  6. Patterson, D. J. and Fenchel, T. 1985. Insights into the evolution of heliozoa (Protozoa, Sarcodina) as provided by ultrastructural studies on a new species of flagellate from the genus Pteridomonas. Biol. J. Linn. Soc. 34: 381-403
  7. Patterson, D. J. 1986. The actinophryid heliozoa (Sarcodina, Actinopoda) as chromophytes. pp. 49 - 67 in Kristiansen, J. & Anderson, R. A. Chrysophytes: aspects and problems, Cambridge University Press, Cambridge & New York.
  8. Smith, R. McK. & Patterson, D. J. 1986. Analyses of heliozoan inter-relationships: an example of the potentials and limitations of the ultrastructural approaches to the study of protistan phylogeny. Proc. R. Soc. Lond. 227:325 - 366.