This list of sequenced fungi genomes contains all the fungal species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences. For all kingdoms, see lists of sequenced genomes. For mitochondrial genomes, see list of sequenced fungi mitochondrial genomes.
Chytridiomycota includes fungi with spores that have flagella (zoospores) and are a sister group to more advanced land fungi that lack flagella. Several chytrid species are pathogens, but have not had their genomes sequenced yet.