Gene bank

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The active gene bank of the International Crops Research Institute for the Semi-Arid Tropics in Patancheru, India. ICRISAT active genebank.jpg
The active gene bank of the International Crops Research Institute for the Semi-Arid Tropics in Patancheru, India.

A gene bank is a type of biorepository that serves to preserve the genetic information of organisms. Gene banks are often used for storing the genetic material of species that are endangered or close to extinction. They are also used for the preservation of major crop species and cultivars, in order to preserve crop diversity.

Contents

Preservation is done via the collection and storage of reproductive material from an organism. For example, seeds and cuttings may be collected from plants, spores may be collected from fungi and sperm and egg cells may be collected from animals. Aquatic organisms such as coral are preserved via the collection of fragments of coral, that are then sustained, live, in a carefully controlled aquatic environment.

The collected material is oftentimes stored at a temperature below 0 °C (32 °F). It may also be stored in cryogenic conditions using liquid nitrogen. Certain gene banks are based around the continuous cultivation of living organisms, such as certain species of plants being raised in a controlled nutrient medium, or artificially created habitats that then harbor certain species.

Gene banks are present all over the world, with differing objectives and resources. One of the largest is the Svalbard Global Seed Vault. [1] [2]

The database of the largest gene banks in the world can be queried via a common website, Genesys. A number of global gene banks are coordinated by the CGIAR Genebank Platform

Types of gene bank

Inside Svalbard Global Seed Vault Svalbard Global Seed Vault, inside the vault - panoramio.jpg
Inside Svalbard Global Seed Vault

Seed bank

Seed banks, also known as seed vaults. are large repositories where seeds of many different species are stored at freezing temperatures. They are used to preserve genetic diversity for the future. The storage temperature depends on how long the seeds are to be kept. Durations of 3–5 years (short term storage), 10-15 years (medium term storage) and 50+ years (long term storage) will typically have storage temperatures of 5 to 10 °C (41 to 50 °F), 0 °C (32 °F) and −18 to −20 °C (0 to −4 °F) respectively. Spores, such as those from pteridophytes can also be stored. However, storage organs, such as the tubers made by root vegetables, cannot be stored. It is also important that when seeds are stored, the moisture content of the seeds and the surrounding medium is kept low, otherwise the seeds will not be viable after long periods in freezing temperatures. [3] The largest seed bank in the world is the Millennium Seed Bank housed at the Wellcome Trust Millennium Building (WTMB), located in the grounds of Wakehurst Place in West Sussex, near London. [4]

Beans stored at a seed vault Beans in hand, gene bank.jpg
Beans stored at a seed vault

In vitro bank

In this technique, buds, protocorm and meristematic cells are preserved through particular light and temperature arrangements in a nutrient medium, which is either a gel or in liquid form. This technique is used to preserve seedless plants and plants that reproduce asexually or that require preservation as clones such as commercial cultivars. [5]

Cryobank

In this technique, a seed or embryo is preserved at very low temperatures. It is usually preserved in liquid nitrogen at −196 °C (−320.8 °F). [6] By freezing the seeds or embryos at this temperature they can stay viable for at least a century. [3] This is helpful for the conservation of species facing extinction. [6] Cryobanks are utilized for the cryoconservation of animal genetic resources. [7] An example of one of the world’s largest animal cryobanks is the frozen zoo made by the San Diego Zoo, in San Diego California. [8] With animal cryobanks freezing embryos is preferred instead of the separate egg and sperm because the embryos are more resistant to the freezing process. [9]

USDA cryopreservation gene bank Cryopreservation USDA Gene Bank.jpg
USDA cryopreservation gene bank

Storage of pollen

Pollen is stored through a cryopreservation technique called vitrification. Vitrification in this context is based around the freezing of pollen grains without the formation of ice crystals, which would heavily damage the pollen. [7] The pollen, which is stored in liquid nitrogen, is kept at temperatures of −180 to −196 °C (−292.0 to −320.8 °F). The National Seed Storage Lab in Fort Collins, Colorado currently uses this technique to store pollen. [10] Pollen can also be freeze dried and stored at temperatures of 5 to −18 °C (41 to 0 °F). [3] An important element that must be considered is the levels of moisture in the pollen. If the pollen grains have a low moisture content it helps increase the length of the pollen’s life. Low levels of moisture help the pollen freeze without creating ice or ice crystals, which helps preserve the life span of the pollen while it is being stored. [11] [12] Ideal levels of moisture content to be allowed in the pollen depends on the type of plant. The pollen from different plant species can be divided into two groups. One is binucleate pollen, which has a thicker exine and the second is trinucleate pollen, which has a thinner exine. Binucleate pollen has a higher lifespan when frozen at a low moisture level. Trinucleate pollen, however, has a higher lifespan when frozen at a high moisture level. [11] Moisture level in the pollen can be decreased by exposing the pollen to diluted salt solutions, silica gel and dry air or by chemical treatment with vitrification solutions. [13]

Field gene banks

Field gene bank in Malaysia Field gene bank of Garcinia mangostana.JPG
Field gene bank in Malaysia

Field gene banks are gene banks based around the management of live specimens, in contrast to a seed bank which is focused on the facilitation of backups of germplasm, typically in the form of seeds. Field gene banks are vulnerable to natural disasters, pests and disease. As such, they are typically used as a method of last resort if a species cannot be preserved via normal means, such as if it didn't produce seeds. This method uses more land, energy and water than other methods.

Facilities

See also

Related Research Articles

<span class="mw-page-title-main">Embryo</span> Multicellular diploid eukaryote in its earliest stage of development

An embryo is the initial stage of development for a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm cell. The resulting fusion of these two cells produces a single-celled zygote that undergoes many cell divisions that produce cells known as blastomeres. The blastomeres are arranged as a solid ball that when reaching a certain size, called a morula, takes in fluid to create a cavity called a blastocoel. The structure is then termed a blastula, or a blastocyst in mammals.

<span class="mw-page-title-main">Seed bank</span> Backup seed storage

A seed bank stores seeds to preserve genetic diversity; hence it is a type of gene bank. There are many reasons to store seeds. One is to preserve the genes that plant breeders need to increase yield, disease resistance, drought tolerance, nutritional quality, taste, etc. of crops. Another is to forestall loss of genetic diversity in rare or imperiled plant species in an effort to conserve biodiversity ex situ. Many plants that were used centuries ago by humans are used less frequently now; seed banks offer a way to preserve that historical and cultural value. Collections of seeds stored at constant low temperature and low moisture are guarded against loss of genetic resources that are otherwise maintained in situ or in field collections. These alternative "living" collections can be damaged by natural disasters, outbreaks of disease, or war. Seed banks are considered seed libraries, containing valuable information about evolved strategies to combat plant stress, and can be used to create genetically modified versions of existing seeds. The work of seed banks often span decades and even centuries. Most seed banks are publicly funded and seeds are usually available for research that benefits the public.

<i>Ex situ</i> conservation Preservation of plants or animals outside their natural habitats

Ex situ conservation is the process of protecting an endangered species, variety, or breed of plant or animal outside its natural habitat. For example, by removing part of the population from a threatened habitat and placing it in a new location, an artificial environment which is similar to the natural habitat of the respective animal and within the care of humans, such as a zoological park or wildlife sanctuary. The degree to which humans control or modify the natural dynamics of the managed population varies widely, and this may include alteration of living environments, reproductive patterns, access to resources, and protection from predation and mortality.

Cryobiology is the branch of biology that studies the effects of low temperatures on living things within Earth's cryosphere or in science. The word cryobiology is derived from the Greek words κρῧος [kryos], "cold", βίος [bios], "life", and λόγος [logos], "word". In practice, cryobiology is the study of biological material or systems at temperatures below normal. Materials or systems studied may include proteins, cells, tissues, organs, or whole organisms. Temperatures may range from moderately hypothermic conditions to cryogenic temperatures.

<span class="mw-page-title-main">Recalcitrant seed</span> Plant seeds intolerant of drying or cold

Recalcitrant seeds are seeds that do not survive drying and freezing during ex situ conservation. By and large, these seeds cannot resist the effects of drying or temperatures less than 10 °C ; thus, they cannot be stored for long periods like orthodox seeds because they can lose their viability. Plants that produce recalcitrant seeds include avocado, mango, mangosteen, lychee, cocoa, rubber tree, some horticultural trees, aquatic plants such as Nymphaea caerulea, and several plants used in traditional medicine, such as species of Virola and Pentaclethra. Generally speaking, most tropical pioneer species have orthodox seeds but many climax species have recalcitrant or intermediate seeds.

Vitrification is the full or partial transformation of a substance into a glass, that is to say, a non-crystalline or amorphous solid. Glasses differ from liquids structurally and glasses possess a higher degree of connectivity with the same Hausdorff dimensionality of bonds as crystals: dimH = 3. In the production of ceramics, vitrification is responsible for their impermeability to water.

<span class="mw-page-title-main">Germplasm</span> Genetic material of an organism

Germplasm refers to genetic resources such as seeds, tissues, and DNA sequences that are maintained for the purpose of animal and plant breeding, conservation efforts, agriculture, and other research uses. These resources may take the form of seed collections stored in seed banks, trees growing in nurseries, animal breeding lines maintained in animal breeding programs or gene banks. Germplasm collections can range from collections of wild species to elite, domesticated breeding lines that have undergone extensive human selection. Germplasm collection is important for the maintenance of biological diversity, food security, and conservation efforts.

A cryoprotectant is a substance used to protect biological tissue from freezing damage. Arctic and Antarctic insects, fish and amphibians create cryoprotectants in their bodies to minimize freezing damage during cold winter periods. Cryoprotectants are also used to preserve living materials in the study of biology and to preserve food products.

<span class="mw-page-title-main">Svalbard Global Seed Vault</span> Globally accessible seed bank on Spitsbergen, Svalbard, Norway

The Svalbard Global Seed Vault is a secure backup facility for the world's crop diversity on the Norwegian island of Spitsbergen in the remote Arctic Svalbard archipelago. The Seed Vault provides long-term storage for duplicates of seeds from around the world, conserved in gene banks. This provides security of the world's food supply against the loss of seeds in genebanks due to mismanagement, accident, equipment failures, funding cuts, war, sabotage, disease, and natural disasters. The Seed Vault is managed under terms spelled out in a tripartite agreement among the Norwegian government, the Crop Trust, and the Nordic Genetic Resource Center (NordGen).

<span class="mw-page-title-main">Oocyte cryopreservation</span> Procedure to preserve a womans eggs (oocytes)

Oocyte cryopreservation is a procedure to preserve a woman's eggs (oocytes). This technique is often used to delay pregnancy. When pregnancy is desired, the eggs can be thawed, fertilized, and transferred to the uterus as embryos. Several studies have shown that most infertility problems are due to germ cell deterioration related to aging. The procedure's success rate varies depending on the woman's age, health, and genetic factors. The first human birth of oocyte cryopreservation was reported in 1986.

Genetic erosion is a process where the limited gene pool of an endangered species diminishes even more when reproductive individuals die off before reproducing with others in their endangered low population. The term is sometimes used in a narrow sense, such as when describing the loss of particular alleles or genes, as well as being used more broadly, as when referring to the loss of a phenotype or whole species.

A frozen zoo is a storage facility in which genetic materials taken from animals are stored at very low temperatures (−196 °C) in tanks of liquid nitrogen. Material preserved in this way can be stored indefinitely and used for artificial insemination, in vitro fertilization, embryo transfer, and cloning. There are a few frozen zoos across the world that implement this technology for conservation efforts. Several different species have been introduced to this technology, including the Pyrenean ibex, Black-footed ferret, and potentially the white rhinoceros.

<span class="mw-page-title-main">Cryopreservation</span> Process to preserve biological matter

Cryopreservation or cryoconservation is a process where biological material - cells, tissues, or organs - are frozen to preserve the material for an extended period of time. At low temperatures any cell metabolism which might cause damage to the biological material in question is effectively stopped. Cryopreservation is an effective way to transport biological samples over long distances, store samples for prolonged periods of time, and create a bank of samples for users. Molecules, referred to as cryoprotective agents (CPAs), are added to reduce the osmotic shock and physical stresses cells undergo in the freezing process. Some cryoprotective agents used in research are inspired by plants and animals in nature that have unique cold tolerance to survive harsh winters, including: trees, wood frogs, and tardigrades. The first human corpse to be frozen with the hope of future resurrection was James Bedford's, a few hours after his cancer-caused death in 1967.[15] Bedford's is the only cryonics corpse frozen before 1974 still frozen today.

Crop diversity or crop biodiversity is the variety and variability of crops, plants used in agriculture, including their genetic and phenotypic characteristics. It is a subset of a specific element of agricultural biodiversity. Over the past 50 years, there has been a major decline in two components of crop diversity; genetic diversity within each crop and the number of species commonly grown.

Semen cryopreservation is a procedure to preserve sperm cells. Semen can be used successfully indefinitely after cryopreservation. It can be used for sperm donation where the recipient wants the treatment in a different time or place, or as a means of preserving fertility for men undergoing vasectomy or treatments that may compromise their fertility, such as chemotherapy, radiation therapy or surgery. It is also often used by trans women prior to medically transitioning in ways that affect fertility, such as feminizing hormone therapy and orchiectomies.

Cryopreservation of embryos is the process of preserving an embryo at sub-zero temperatures, generally at an embryogenesis stage corresponding to pre-implantation, that is, from fertilisation to the blastocyst stage.

A cryopreservation straw is a small storage device used for the cryogenic storage of liquid samples, often in a biobank or other collection of samples. Their most common application is for storage of sperm for in-vitro fertilization.

<span class="mw-page-title-main">Cryoconservation of animal genetic resources</span>

Cryoconservation of animal genetic resources is a strategy wherein samples of animal genetic materials are preserved cryogenically.

The Australian Grains Genebank (AGG) is a national center for storing genetic material for plant breeding and research. The Genebank is in a collaboration with the Australian Seed Bank Partnership on an Australian Crop Wild Relatives project. It is located at Grains Innovation Park, in Horsham, Victoria, Australia.

Plant cryopreservation is a genetic resource conservation strategy that allows plant material, such as seeds, pollen, shoot tips or dormant buds to be stored indefinitely in liquid nitrogen. After thawing, these genetic resources can be regenerated into plants and used on the field. While this cryopreservation conservation strategy can be used on all plants, it is often only used under certain circumstances: 1) crops with recalcitrant seeds e.g. avocado, coconut 2) seedless crops such as cultivated banana and plantains or 3) crops that are clonally propagated such as cassava, potato, garlic and sweet potato.

References

  1. On practical and theoretical differences between a storage and a gene bank, see Nicole C. Karafyllis (ed.): Theorien der Lebendsammlung. Pflanzen, Mikroben und Tiere als Biofakte in Genbanken (in German), Freiburg: Karl Alber 2018 (Lebenswissenschaften im Dialog Vol. 25) ISBN   978-3-495-48975-8
  2. Liu, Rita (15 April 2022). "Seed banks: the last line of defense against a threatening global food crisis". The Guardian. ISSN   0261-3077 . Retrieved 2 March 2023.
  3. 1 2 3 Babasaheb, Jige, Sandipan (December 2021). "'NEW TRENDS IN BIODIVERSITY CONSERVATION'". www.jetir.org. Retrieved 11 October 2023.{{cite web}}: CS1 maint: multiple names: authors list (link)
  4. Gosling, Rebecca (2 December 2020). "What is a seed bank, how does it work and why is it important?". Woodland Trust. Retrieved 11 October 2023.
  5. "In vitro bank". cropgenebank.sgrp.cgiar.org. Retrieved 20 April 2021.
  6. 1 2 "Cryo bank". cropgenebank.sgrp.cgiar.org. Retrieved 1 November 2023.
  7. 1 2 "Cryoconservation of Animal Genetic Resources" (PDF). Rep. Rome: Food and Agriculture Organization of the United Nations. FAO Animal Production and Health Guidelines No. 12. Print. 2012.
  8. Prisco, Jacopo (31 March 2022). "Back from the brink: How 'frozen zoos' could save dying species". CNN. Retrieved 1 November 2023.
  9. "The Frozen Zoo". 21 May 2010. Archived from the original on 21 May 2010. Retrieved 1 November 2023.{{cite web}}: CS1 maint: bot: original URL status unknown (link)
  10. Connor, Kristina F.; Towill, Leigh E. (1 January 1993). "Pollen-handling protocol and hydration/dehydration characteristics of pollen for application to long-term storage". Euphytica. 68 (1): 77–84. doi:10.1007/BF00024157. ISSN   1573-5060.
  11. 1 2 Janick, Jules (7 April 2010). Plant Breeding Reviews, Volume 13. John Wiley & Sons. ISBN   978-0-470-65004-2.
  12. Kartha (3 April 1985). Cryopreservation of Plant Cells and Organs. CRC Press. ISBN   978-0-8493-6102-9.
  13. Dinato, N. B.; Santos, I. R. I.; Vigna, B. B. Z.; Ferreira de Paula, A.; Favero, A. P. (2020). "PERSPECTIVE: Pollen Cryopreservation for Plant Breeding and Genetic Resources Conservation". Cryo Letters. 41 (3): 115–127. ISSN   0143-2044. PMID   33988640.
  14. Smith, Carl. Inside the Pacific's CePaCT plant gene bank, a last line of defence for crop species loss, ABC News , 17 October 2023. Retrieved 8 September 2024.

Further reading