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Pseudomonadota is a major phylum of Gram-negative bacteria. The renaming of several prokaryote phyla in 2021, including Pseudomonadota, remains controversial among microbiologists, many of whom continue to use the earlier name Proteobacteria, of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as Escherichia, Salmonella, Vibrio, Yersinia, Legionella, and many others. Others are free-living (non-parasitic) and include many of the bacteria responsible for nitrogen fixation.
Micromonosporaceae is a family of bacteria of the class Actinomycetia. They are gram-positive, spore-forming soil organisms that form a true mycelium.
Geobacter is a genus of bacteria. Geobacter species are anaerobic respiration bacterial species which have capabilities that make them useful in bioremediation. Geobacter was found to be the first organism with the ability to oxidize organic compounds and metals, including iron, radioactive metals, and petroleum compounds into environmentally benign carbon dioxide while using iron oxide or other available metals as electron acceptors. Geobacter species are also found to be able to respire upon a graphite electrode. They have been found in anaerobic conditions in soils and aquatic sediment.
Desulfobacterales are an order of sulfate-reducing bacteria within the phylum Thermodesulfobacteria. The order contains three families; Desulfobacteraceae, Desulfobulbaceae, and Nitrospinaceae. The bacterium in this order are strict anaerobic respirators, using sulfate or nitrate as the terminal electron acceptor instead of oxygen. Desulfobacterales can degrade ethanol, molecular hydrogen, organic acids, and small hydrocarbons. The bacterium of this order have a wide ecological range and play important environmental roles in symbiotic relationships and nutrient cycling.
The Desulfobacteraceae are a family of Thermodesulfobacteriota. They reduce sulfates to sulfides to obtain energy and are strictly anaerobic. They have a respiratory and fermentative type of metabolism. Some species are chemolithotrophic and use inorganic materials to obtain energy and use hydrogen as their electron donor.
Campylobacterota are a phylum of bacteria. All species of this phylum are Gram-negative.
Ignicoccus is a genus of hyperthermophillic Archaea living in marine hydrothermal vents. They were discovered in samples taken at the Kolbeinsey Ridge north of Iceland, as well as at the East Pacific Rise in 2000.
Nitrospira translate into “a nitrate spiral” is a genus of bacteria within the monophyletic clade of the Nitrospirota phylum. The first member of this genus was described 1986 by Watson et al. isolated from the Gulf of Maine. The bacterium was named Nitrospira marina. Populations were initially thought to be limited to marine ecosystems, but it was later discovered to be well-suited for numerous habitats, including activated sludge of wastewater treatment systems, natural biological marine settings, water circulation biofilters in aquarium tanks, terrestrial systems, fresh and salt water ecosystems, and hot springs. Nitrospira is a ubiquitous bacterium that plays a role in the nitrogen cycle by performing nitrite oxidation in the second step of nitrification. Nitrospira live in a wide array of environments including but not limited to, drinking water systems, waste treatment plants, rice paddies, forest soils, geothermal springs, and sponge tissue. Despite being abundant in many natural and engineered ecosystems Nitrospira are difficult to culture, so most knowledge of them is from molecular and genomic data. However, due to their difficulty to be cultivated in laboratory settings, the entire genome was only sequenced in one species, Nitrospira defluvii. In addition, Nitrospira bacteria's 16S rRNA sequences are too dissimilar to use for PCR primers, thus some members go unnoticed. In addition, members of Nitrospira with the capabilities to perform complete nitrification has also been discovered and cultivated.
Methanosarcinales is an order of archaeans in the class Methanomicrobia.
Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, Nitrospira marina, was discovered in 1985. The second member, Nitrospira moscoviensis, was discovered in 1995.
Dehalogenimonas is a genus in the phylum Chloroflexota (Bacteria). Members of the genus Dehalogenimonas can be referred to as dehalogenimonads.
"Candidatus Scalindua" is a bacterial genus, and a proposed member of the order Planctomycetales. These bacteria lack peptidoglycan in their cell wall and have a compartmentalized cytoplasm. They are ammonium oxidizing bacteria found in marine environments.
Sulfurovum is a genus within the Campylobacterota which was first described in 2004 with the isolation and description of the type species Sulfurovum lithotrophicum from Okinawa trough hydrothermal sediments. Named for their ability to oxidize sulfur and their egg-like shape, cells are gram-negative, coccoid to short rods. Mesophilic chemolithoautotrophic growth occurs by oxidation of sulfur compounds coupled to the reduction of nitrate or molecular oxygen.
Melghirimyces is a bacterial genus from the family of Thermoactinomycetaceae.
Ilumatobacter is a genus from the order Acidimicrobiales.
Cable bacteria are filamentous bacteria that conduct electricity across distances over 1 cm in sediment and groundwater aquifers. Cable bacteria allow for long-distance electron transport, which connects electron donors to electron acceptors, connecting previously separated oxidation and reduction reactions. Cable bacteria couple the reduction of oxygen or nitrate at the sediment's surface to the oxidation of sulfide in the deeper, anoxic, sediment layers.
Anaerolineaceae is a family of bacteria from the order of Anaerolineales. Anaerolineaceae bacteria occur in marine sediments. There are a total of twelve genera in this family, most of which only encompass one species. All known members of the family are Gram-negative and non-motile. They also do not form bacterial spores and are either mesophilic or thermophilic obligate anaerobes. It is also known that all species in this family are chemoheterotrophs.
Microbial oxidation of sulfur is the oxidation of sulfur by microorganisms to build their structural components. The oxidation of inorganic compounds is the strategy primarily used by chemolithotrophic microorganisms to obtain energy to survive, grow and reproduce. Some inorganic forms of reduced sulfur, mainly sulfide (H2S/HS−) and elemental sulfur (S0), can be oxidized by chemolithotrophic sulfur-oxidizing prokaryotes, usually coupled to the reduction of oxygen (O2) or nitrate (NO3−). Anaerobic sulfur oxidizers include photolithoautotrophs that obtain their energy from sunlight, hydrogen from sulfide, and carbon from carbon dioxide (CO2).
Modulibacteria(Moduliflexota) is a bacterial phylum formerly known as KS3B3 or GN06. It is a candidate phylum, meaning there are no cultured representatives of this group. Members of the Modulibacteria phylum are known to cause fatal filament overgrowth (bulking) in high-rate industrial anaerobic wastewater treatment bioreactors.
Euzebya is a genus of Gram-positive bacteria.
References
- Kuever J, Rainey FA, Widdel F (2005). "Order III. Desulfobacterales ord. nov.; Family II. Desulfobulbaceae ord. nov. fam. nov.". In Garrity G, Brenner D, Krieg N, et al. (eds.). Bergey's Manual of Systematic Bacteriology . Vol. 2. Springer. pp. 988–998. ISBN 978-0-387-24145-6.
- "Desulfobulbaceae". NCBI Taxonomy Browser. 213121.
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