Anaerolineaceae

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Anaerolineaceae
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Domain: Bacteria
Phylum: Chloroflexota
Class: Anaerolineae
Order: Anaerolineales
Family: Anaerolineaceae
Yamada et al. 2006 [1] [2] [3]
Genera [4]

Anaerolineaceae is a family of bacteria from the order of Anaerolineales. [1] [4] [5] [6] Anaerolineaceae bacteria occur in marine sediments. [7] There are a total of twelve genera in this family, most of which only encompass one species. [8] All known members of the family are Gram-negative and non-motile. They also do not form bacterial spores and are either mesophilic or thermophilic obligate anaerobes. It is also known that all species in this family are chemoheterotrophs. [9]

History

The first species discovered in the family Anaerolineaceae was the species Anaerolinea thermophila , with a report on the matter written by Yuji Sekiguchi et. al. in 2003. [10] It was isolated alongside the bacterial species Caldilinea aerophila , a facultative anaerobe. The discovery of these two specimens prompted the addition of a new subphylum in bacterial taxonomy. [10]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI). [11]

16S rRNA based LTP_06_2022 [12] [13] [14] 120 single copy marker proteins based GTDB 08-RS214 [15] [16] [17]
Aggregatilineales
Aggregatilineaceae

Aggregatilinea Nakahara et al. 2019

"Phototrophicaceae"

" Phototrophicus " Zheng et al. 2022

Anaerolineales
EnvOPS12

" Desulfolinea " Van Vliet et al. 2020

Anaerolineaceae

" Brevefilum " corrig. McIlroy et al. 2017

Pelolinea Imachi et al. 2014

Flexilinea Sun et al. 2016

Ornatilinea Podosokorskaya et al. 2013

Levilinea Yamada et al. 2006

Leptolinea Yamada et al. 2006

Anaerolinea Sekiguchi et al. 2003

Longilinea Yamada et al. 2007

Bellilinea Yamada et al. 2007

" Thermanaerothrix " Gregoire et al. 2011

See also

Related Research Articles

The Thermomicrobia is a group of thermophilic green non-sulfur bacteria. Based on species Thermomicrobium roseum and Sphaerobacter thermophilus, this bacteria class has the following description:

The Chloroflexota are a phylum of bacteria containing isolates with a diversity of phenotypes, including members that are aerobic thermophiles, which use oxygen and grow well in high temperatures; anoxygenic phototrophs, which use light for photosynthesis ; and anaerobic halorespirers, which uses halogenated organics as electron acceptors.

<span class="mw-page-title-main">Bacterial phyla</span> Phyla or divisions of the domain Bacteria

Bacterial phyla constitute the major lineages of the domain Bacteria. While the exact definition of a bacterial phylum is debated, a popular definition is that a bacterial phylum is a monophyletic lineage of bacteria whose 16S rRNA genes share a pairwise sequence identity of ~75% or less with those of the members of other bacterial phyla.

Anaerolinea thermophila is a species of filamentous thermophilic bacteria, the type and only species of its genus. It is Gram-negative, non-spore-forming, with type strain UNI-1T.

Caldilinea aerophila is a species of filamentous thermophilic bacteria, and the type species of its genus. It is Gram-negative, non-spore-forming, with type strain STL-6-O1T.

Anaerolinea thermolimosa is a thermophilic, non-spore-forming, non-motile, Gram-negative, filamentous bacteria with type strain IMO-1T.

Levilinea saccharolytica is a mesophilic, non-spore-forming, non-motile, Gram-negative, filamentous bacteria with type strain KIBI-1T, the type species of its genus.

Leptolinea tardivitalis is a mesophilic, non-spore-forming, non-motile, Gram-negative, filamentous bacteria with type strain YMTK-2T, the type species of its genus.

Pelotomaculum is a Gram-positive strictly anaerobic, mesophilic, thermophilic and non-motile bacterial genus from the family of Peptococcaceae.

Anaerolinea is a bacteria genus from the family of Anaerolineaceae.

Tepidanaerobacter is a genus of anaerobic, moderately thermophilic, syntrophic bacteria from the family Tepidanaerobacteraceae.

Tepidanaerobacter syntrophicus is an anaerobic, moderately thermophilic and syntrophic bacterium from the genus of Tepidanaerobacter which has been isolated from sewage sludge in Niigata in Japan.

Bellilinea is a thermophilic bacteria genus from the family of Anaerolineaceae with one known species. Bellilinea caldifistulae has been isolated from thermophilic digester sludge from Niigata in Japan.

Flexilinea is a bacteria genus from the family of Anaerolineaceae with one known species. Flexilinea flocculi has been isolated from methanogenic granular sludge.

Leptolinea is a bacteria genus from the family of Anaerolineaceae with one known species.

Levilinea is a bacteria genus from the family of Anaerolineaceae with one known species.

Longilinea is a bacteria genus from the family of Anaerolineaceae with one known species. .

Caldilinea is a genus of bacteria from the family of Caldilineaceae.

Lactivibrio is a genus of bacteria from the family of Synergistaceae with one known species. Lactivibrio alcoholicus has been isolated from mesophilic granular sludge from Tokyo in Japan.

Modulibacteria(Moduliflexota) is a bacterial phylum formerly known as KS3B3 or GN06. It is a candidate phylum, meaning there are no cultured representatives of this group. Members of the Modulibacteria phylum are known to cause fatal filament overgrowth (bulking) in high-rate industrial anaerobic wastewater treatment bioreactors.

References

  1. 1 2 Parker, Charles Thomas; Wigley, Sarah; Garrity, George M; Taylor, Dorothea (2009). Parker, Charles Thomas; Garrity, George M. (eds.). "Nomenclature Abstract for Anaerolineaceae Yamada et al. 2006". The NamesforLife Abstracts. doi:10.1601/nm.576 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
  2. 1 2 Parte, A.C. "Anaerolineaceae". LPSN .
  3. Rada, Elena C. (2015). Biological Treatment of Solid Waste: Enhancing Sustainability. CRC Press. ISBN   9781771882804.
  4. 1 2 "Anaerolineaceae". www.uniprot.org.
  5. Satyanarayana, Tulasi; Littlechild, Jennifer; Kawarabayasi, Yutaka (2013). Thermophilic Microbes in Environmental and Industrial Biotechnology: Biotechnology of Thermophiles. Springer Science & Business Media. ISBN   9789400758995.
  6. Ismail, Wael A.; Hamme, Jonathan D. Van; Kilbane, John J.; Gu, Ji-Dong (2017). Petroleum Microbial Biotechnology: Challenges and Prospects. Frontiers Media SA. ISBN   9782889452569.
  7. Teske, Andreas; Biddle, Jennifer F.; Edgcomb, Virginia P.; Schippers, Axel (2015). Deep Subsurface Microbiology. Frontiers Media SA. ISBN   9782889195367.
  8. "Anaerolineaceae". www.uniprot.org. Retrieved 2022-04-15.
  9. "Anaerolineaceae". ResearchGate. Retrieved 2022-04-15.
  10. 1 2 Sekiguchi, Yuji; Yamada, Takeshi; Hanada, Satoshi; Ohashi, Akiyoshi; Harada, Hideki; Kamagata, Yoichi (November 2003). "Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level". International Journal of Systematic and Evolutionary Microbiology. 53 (Pt 6): 1843–1851. doi: 10.1099/ijs.0.02699-0 . ISSN   1466-5026. PMID   14657113.
  11. Sayers; et al. "Chloroflexi". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2014-03-20.
  12. "The LTP" . Retrieved 10 May 2023.
  13. "LTP_all tree in newick format" . Retrieved 10 May 2023.
  14. "LTP_06_2022 Release Notes" (PDF). Retrieved 10 May 2023.
  15. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  16. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  17. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
  18. 1 2 3 Yamada, T.; Sekiguchi, Y.; Hanada, S.; Imachi, H.; Ohashi, A.; Harada, H.; Kamagata, Y. (2006). "Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. And Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. in the bacterial phylum Chloroflexi". International Journal of Systematic and Evolutionary Microbiology. 56 (6): 1331–1340. doi: 10.1099/ijs.0.64169-0 . PMID   16738111.
  19. Sekiguchi, Y.; Yamada, T.; Hanada, S.; Ohashi, A.; Harada, H.; Kamagata, Y. (2003). "Anaerolinea thermophila gen. nov., sp. nov. And Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level". International Journal of Systematic and Evolutionary Microbiology. 53 (6): 1843–1851. doi: 10.1099/ijs.0.02699-0 . PMID   14657113.
  20. Yamada, T.; Imachi, H.; Ohashi, A.; Harada, H.; Hanada, S.; Kamagata, Y.; Sekiguchi, Y. (2007). "Bellilinea caldifistulae gen. nov., sp. nov. And Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia". International Journal of Systematic and Evolutionary Microbiology. 57 (10): 2299–2306. doi: 10.1099/ijs.0.65098-0 . PMID   17911301.

Further reading