Glycerate kinase

glycerate kinase
Identifiers
EC no.	2.7.1.31
CAS no.	9026-61-3
Databases
IntEnz	IntEnz view
BRENDA	BRENDA entry
ExPASy	NiceZyme view
KEGG	KEGG entry
MetaCyc	metabolic pathway
PRIAM	profile
PDB structures	RCSB PDB PDBe PDBsum
Gene Ontology	AmiGO / QuickGO
Search PMC articles PubMed articles NCBI proteins

Glycerate kinase
Identifiers
Symbol	Glyc_kinase
Pfam	PF02595
InterPro	IPR004381
Available protein structures: Pfam   structures / ECOD   PDB RCSB PDB; PDBe; PDBj PDBsum structure summary PDB PDB: 1to6 ​

In enzymology, a glycerate kinase (EC 2.7.1.31) is an enzyme that catalyzes the chemical reaction

ATP + (R)-glycerate ${\displaystyle \rightleftharpoons }$ ADP + 3-phospho-(R)-glycerate

or

ATP + (R)-glycerate ${\displaystyle \rightleftharpoons }$ ADP + 2-phospho-(R)-glycerate

Thus, the two substrates of this enzyme are ATP and (R)-glycerate, whereas its two products are ADP and either 3-phospho-(R)-glycerate or 2-phospho-(R)-glycerate. ^[1]

This enzyme belongs to the family of transferases, specifically those transferring phosphorus-containing groups (phosphotransferases) with an alcohol group as acceptor. The systematic name of this enzyme class is ATP:(R)-glycerate 3-phosphotransferase. Other names in common use include glycerate kinase (phosphorylating), D-glycerate 3-kinase, D-glycerate kinase, glycerate-3-kinase, GK, D-glyceric acid kinase, and ATP:D-glycerate 2-phosphotransferase. This enzyme participates in 3 metabolic pathways: serine/glycine/threonine metabolism, glycerolipid metabolism, and glyoxylate-dicarboxylate metabolism.

This enzyme had been thought to produce 3-phosphoglycerate, but some glycerate kinases produce 2-phosphoglycerate instead. ^[1]

Structural studies

As of late 2007, 3 structures have been solved for this class of enzymes, with PDB accession codes 1TO6, 1X3L, and 2B8N.

References

1. Bartsch, Oliver; Hagemann, Martin; Bauwe, Hermann (2008-09-03). "Only plant-type (GLYK) glycerate kinases produce d-glycerate 3-phosphate". FEBS Letters. 582 (20): 3025–3028. Bibcode:2008FEBSL.582.3025B. doi: 10.1016/j.febslet.2008.07.038 . ISSN   0014-5793. PMID   18675808. S2CID   28262946.

• Doughty CC, Hayashi JA, Guenther HL (1966). "Purification and properties of D-glycerate 3-kinase from Escherichia coli". J. Biol. Chem. 241 (3): 568–72. doi: 10.1016/S0021-9258(18)96874-2 . PMID   5325263.
• ICHIHARA A, GREENBERG DM (1957). "Studies on the purification and properties of D-glyceric acid kinase of liver". J. Biol. Chem. 225 (2): 949–58. doi: 10.1016/S0021-9258(18)64892-6 . PMID   13416296.