Adlercreutzia

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Adlercreutzia
Scientific classification
Domain:
Bacteria
Phylum:
Actinomycetota
Class:
Coriobacteriia
Order:
Eggerthellales
Family:
Eggerthellaceae
Genus:
Adlercreutzia

Maruo et al. 2008 [1] [2]
Type species
Adlercreutzia equolifaciens
Maruo et al. 2008
Species

See text.

Synonyms
  • ParvibacterClavel et al. 2013
  • EnterorhabdusClavel et al. 2009
  • Asaccharobacter Minamida et al. 2008

Adlercreutzia is a genus in the phylum Actinomycetota (Bacteria). [1]

Etymology

The generic name derives from H. Adlercreutz, a professor at the University of Helsinki in Finland, for his contributions to research on the effects of phytoestrogens on human health. [2]

Taxonomy

In 2018, Nouioui et al. proposed merging the genera Asaccharobacter, Enterorhabdus and Parvibacter within the genus Adlercreutzia based on observed clustering of these genera within phylogenetic trees. [3] However, subsequent phylogenetic analyses observed that Parvibacter caecicola exhibited much deeper branching compared to other Adlercreutzia species. [4] Additionally, five conserved signature indels (CSIs) present in the proteins excinuclease ABC subunit UvrA, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, phosphoribosylformylglycinamidine synthase, valine-tRNA ligase and cysteine–tRNA ligase were identified to be exclusively shared by all Adlercreutzia species with the exception of P. caecicola. [4] Thus, the emended description of the genus Adlercreutzia is the same as given before, with the exclusion of P. caecicola, which has been transferred back into the genus Parvibacter.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI). [5]

16S rRNA based LTP_08_2023 [6] [7] [8] 120 marker proteins based GTDB 08-RS214 [9] [10] [11]
Adlercreutzia

A. muris(Lagkouvardos et al. 2016) Nouioui et al. 2018

A. caecimuris(Clavel et al. 2010) Nouioui et al. 2018

A. mucosicola(Clavel et al. 2009) Nouioui et al. 2018

A. caecicola(Clavel et al. 2013) Nouioui et al. 2018

Adlercreutzia equolifaciens Maruo et al. 2008

Adlercreutzia hattorii Sakamoto et al. 2021

Parvibacter caecicola Clavel et al. 2013 [Adlercreutzia caecicola]

Adlercreutzia

A. caecimuris

A. muris

A. mucosicola

Species incertae sedis: [2]

See also

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References

  1. 1 2 Maruo, T.; Sakamoto, M.; Ito, C.; Toda, T.; Benno, Y. (2008). "Adlercreutzia equolifaciens gen. Nov., sp. Nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella". International Journal of Systematic and Evolutionary Microbiology. 58 (5): 1221–1227. doi: 10.1099/ijs.0.65404-0 . PMID   18450717.
  2. 1 2 3 4 Euzéby JP, Parte AC. "Adlercreutzia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 23, 2021.
  3. ↑ Nouioui, Imen; Carro, Lorena; García-López, Marina; Meier-Kolthoff, Jan P.; Woyke, Tanja; Kyrpides, Nikos C.; Pukall, Rüdiger; Klenk, Hans-Peter; Goodfellow, Michael; Göker, Markus (2018). "Genome-Based Taxonomic Classification of the Phylum Actinobacteria". Frontiers in Microbiology. 9: 2007. doi: 10.3389/fmicb.2018.02007 . ISSN   1664-302X. PMC   6113628 . PMID   30186281.
  4. 1 2 Gupta, Radhey S. (2021), Carro, Lorena (ed.), "Eggerthellaceae", Bergey's Manual of Systematics of Archaea and Bacteria, American Cancer Society, pp. 1–11, doi:10.1002/9781118960608.fbm00384, ISBN   978-1-118-96060-8, S2CID   243126790 , retrieved 2021-07-05
  5. ↑ Sayers; et al. "Adlercreutzia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  6. ↑ "The LTP" . Retrieved 20 November 2023.
  7. ↑ "LTP_all tree in newick format" . Retrieved 20 November 2023.
  8. ↑ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  9. ↑ "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. ↑ "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  11. ↑ "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
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