Anthranilate phosphoribosyltransferase | |||||||||
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Identifiers | |||||||||
EC no. | 2.4.2.18 | ||||||||
CAS no. | 9059-35-2 | ||||||||
Databases | |||||||||
IntEnz | IntEnz view | ||||||||
BRENDA | BRENDA entry | ||||||||
ExPASy | NiceZyme view | ||||||||
KEGG | KEGG entry | ||||||||
MetaCyc | metabolic pathway | ||||||||
PRIAM | profile | ||||||||
PDB structures | RCSB PDB PDBe PDBsum | ||||||||
Gene Ontology | AmiGO / QuickGO | ||||||||
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In enzymology, an anthranilate phosphoribosyltransferase (EC 2.4.2.18) is an enzyme that catalyzes the chemical reaction
The two substrates of this enzyme are anthranilate and phosphoribosyl pyrophosphate. Its two products are N-(5-phosphoribosyl)-anthranilate and diphosphate. [1] [2]
This enzyme participates in aromatic amino acid biosynthesis and two-component system (general).
This enzyme belongs to the family of glycosyltransferases, specifically the pentosyltransferases. The systematic name of this enzyme class is N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase. Other names in common use are:
Anthranilate phosphoribosyltransferase (AnPRT) is a transferase enzyme which catalyses one of the most fundamental biochemical reactions: the transfer of a ribose group between an aromatic base and phosphate groups. [3] More specifically, AnPRT facilitates the formation of a carbon-nitrogen bond between 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) and anthranilate. [3]
In the aromatic amino acid biosynthesis pathway specifically the tryptophan synthesis portion, AnPRT draws anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate into the active site of the protein. Through the Sn1 mechanism below, AnPRT transfers the 5-phospho-alpha-D-ribose group (shown in blue) to the anthranilate (shown in red) from the diphosphate molecule (shown in black). [3]
As of late 2007, 12 structures have been solved for this class of enzymes, with PDB accession codes 1GXB, 1KGZ, 1KHD, 1O17, 1V8G, 1VQU, 1ZVW, 1ZXY, 1ZYK, 2BPQ, 2ELC, and 2GVQ.
AnPRT has four domains and its quaternary structure consists of two identical protein structures. [3] Each domain of AnPRT contains a magnesium ion and a pyrophosphate molecule as the active site. [3] The secondary structure of AnPRT consists mainly of alpha helices with a beta sheet within each domain.
There are homologues of AnPRT within Saccharomyces cerevisiae , Kluyveromyces lactis , Schizosaccharomyces pombe , Magnaporthe grisea , Neurospora crassa , Arabidopsis thaliana , and Oryza sativa . [4] All of these organisms are alike in the sense that they make all of the amino acids needed for proper protein formation (also called autotrophs).
AnPRT is vital in these organisms because it is a vital step in the pathway to synthesis tryptophan, an essential amino acid in humans, which humans take from eating plants or fungi.
(This entire section comes from the paper written by Dr. Robert Last and his collaborators, referenced here: [5] )
An experiment was conducted on the varying mutations in the gene which codes for AnPRT in Arabidopsis. This study focused on the observed fluorescence of Arabidopsis plants when the gene which coded for AnPRT was mutated. It was found that there were nine mutations of the gene all with varying auxotrophic and prototrophic capabilities.
It was discovered that there was an increased level of anthranilate in the cells of Arabidopsis which were mutated. This was concluded to be linked to the fluorescence of the plants.
This study's relevance comes from the applications of the conclusions found by the scientists. The auxotrophic mutant could be used as a selectable marker in plant transformations. This can lead to a better way to engineer plants and find new ways to develop their systems to work for humanities purposes.
Histidine (symbol His or H) is an essential amino acid that is used in the biosynthesis of proteins. It contains an α-amino group (which is in the protonated –NH3+ form under biological conditions), a carboxylic acid group (which is in the deprotonated –COO− form under biological conditions), and an imidazole side chain (which is partially protonated), classifying it as a positively charged amino acid at physiological pH. Initially thought essential only for infants, it has now been shown in longer-term studies to be essential for adults also. It is encoded by the codons CAU and CAC.
Phosphoribosyl pyrophosphate (PRPP) is a pentose phosphate. It is a biochemical intermediate in the formation of purine nucleotides via inosine-5-monophosphate, as well as in pyrimidine nucleotide formation. Hence it is a building block for DNA and RNA. The vitamins thiamine and cobalamin, and the amino acid tryptophan also contain fragments derived from PRPP. It is formed from ribose 5-phosphate (R5P) by the enzyme ribose-phosphate diphosphokinase:
Amino acid synthesis is the set of biochemical processes by which the amino acids are produced. The substrates for these processes are various compounds in the organism's diet or growth media. Not all organisms are able to synthesize all amino acids. For example, humans can synthesize 11 of the 20 standard amino acids. These 11 are called the non-essential amino acids).
An aromatic amino acid is an amino acid that includes an aromatic ring.
The acetolactate synthase (ALS) enzyme is a protein found in plants and micro-organisms. ALS catalyzes the first step in the synthesis of the branched-chain amino acids.
Ribose 5-phosphate (R5P) is both a product and an intermediate of the pentose phosphate pathway. The last step of the oxidative reactions in the pentose phosphate pathway is the production of ribulose 5-phosphate. Depending on the body's state, ribulose 5-phosphate can reversibly isomerize to ribose 5-phosphate. Ribulose 5-phosphate can alternatively undergo a series of isomerizations as well as transaldolations and transketolations that result in the production of other pentose phosphates as well as fructose 6-phosphate and glyceraldehyde 3-phosphate.
Phosphoribosylformylglycinamidine cyclo-ligase is the fifth enzyme in the de novo synthesis of purine nucleotides. It catalyzes the reaction to form 5-aminoimidazole ribotide (AIR) from formylglycinamidine-ribonucleotide FGAM. This reaction closes the ring and produces a 5-membered imidazole ring of the purine nucleus (AIR):
Orotate phosphoribosyltransferase (OPRTase) or orotic acid phosphoribosyltransferase is an enzyme involved in pyrimidine biosynthesis. It catalyzes the formation of orotidine 5'-monophosphate (OMP) from orotate and phosphoribosyl pyrophosphate. In yeast and bacteria, orotate phosphoribosyltransferase is an independent enzyme with a unique gene coding for the protein, whereas in mammals and other multicellular organisms, the catalytic function is carried out by a domain of the bifunctional enzyme UMP synthase (UMPS).
Purine metabolism refers to the metabolic pathways to synthesize and break down purines that are present in many organisms.
Amidophosphoribosyltransferase (ATase), also known as glutamine phosphoribosylpyrophosphate amidotransferase (GPAT), is an enzyme responsible for catalyzing the conversion of 5-phosphoribosyl-1-pyrophosphate (PRPP) into 5-phosphoribosyl-1-amine (PRA), using the amine group from a glutamine side-chain. This is the committing step in de novo purine synthesis. In humans it is encoded by the PPAT gene. ATase is a member of the purine/pyrimidine phosphoribosyltransferase family.
Ribose-phosphate diphosphokinase is an enzyme that converts ribose 5-phosphate into phosphoribosyl pyrophosphate (PRPP). It is classified under EC 2.7.6.1.
In enzymology, a phosphoribosylanthranilate isomerase (PRAI) is an enzyme that catalyzes the third step of the synthesis of the amino acid tryptophan.
The enzyme anthranilate synthase catalyzes the chemical reaction
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In enzymology, an ATP phosphoribosyltransferase is an enzyme that catalyzes the chemical reaction
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In enzymology, a xanthine phosphoribosyltransferase is an enzyme that catalyzes the chemical reaction
In enzymology, a ribose 1,5-bisphosphate phosphokinase is an enzyme that catalyzes the chemical reaction