Oryza sativa

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Oryza sativa
Mature Rice (India) by Augustus Binu.jpg
Mature seed heads
Oryza sativa at Kadavoor.jpg
Inflorescence
Scientific classification OOjs UI icon edit-ltr.svg
Kingdom: Plantae
Clade: Tracheophytes
Clade: Angiosperms
Clade: Monocots
Clade: Commelinids
Order: Poales
Family: Poaceae
Genus: Oryza
Species:
O. sativa
Binomial name
Oryza sativa
L.
Synonyms [1]
List
    • Oryza aristataBlanco
    • Oryza communissimaLour.
    • Oryza denudata(Desv.) Steud.
    • Oryza elongata(Desv.) Steud.
    • Oryza formosanaMasam. & Suzuki
    • Oryza glutinosaLour.
    • Oryza marginata(Desv.) Steud.
    • Oryza montanaLour.
    • Oryza muticaSteud.
    • Oryza palustrisSalisb.
    • Oryza parvifloraP.Beauv.
    • Oryza perennisMoench
    • Oryza plena(Prain) N.P.Chowdhury
    • Oryza praecoxLour.
    • Oryza pubescens(Desv.) Steud.
    • Oryza pumilaSteud.
    • Oryza repensBuch.-Ham. ex Steud.
    • Oryza rubribarbis(Desv.) Steud.
    • Oryza sativa subsp. indicaShig.Kato
    • Oryza sativa subsp. japonicaShig.Kato
    • Oryza segetalisRussell ex Steud.

Oryza sativa, having the common name Asian cultivated rice [2] , is the much more common of the two rice species cultivated as a cereal, the other species being O. glaberrima , African rice. It was first domesticated in the Yangtze River basin in China 13,500 to 8,200 years ago. [3] [4] [5] [6]

Contents

Oryza sativa belongs to the genus Oryza and the BOP clade in the grass family Poaceae. With a genome consisting of 430  Mbp across 12 chromosomes, it is renowned for being easy to genetically modify and is a model organism for the study of the biology of cereals and monocots. [7]

Description

O. sativa has an erect stalk stem that grows 80–120 cm (30–45 in) tall, with a smooth surface. The leaf is lanceolate, 15–30 cm (5+7811+34 in) long, and grows from a ligule 10–20 mm (3834 in) long. [8]

Classification

The generic name Oryza [9] is a classical Latin word for rice, while the specific epithet sativa means "cultivated". [10] [11]

Oryza sativa contains two major subspecies: the sticky, short-grained japonica or sinica variety, and the nonsticky, long-grained indica[ zh ][ ja ] rice variety. Japonica was domesticated in the Yangtze Valley 9–6,000 years ago, [12] and its varieties can be cultivated in dry fields (it is cultivated mainly submerged in Japan), in temperate East Asia, upland areas of Southeast Asia, and high elevations in South Asia, while indica was domesticated around the Ganges 8,500–4,500 years ago, [12] and its varieties are mainly lowland rices, grown mostly submerged, throughout tropical Asia. Rice grain occurs in a variety of colors, including white, brown, black, purple, and red rices. [13] [14]

A third subspecies, which is broad-grained and thrives under tropical conditions, was identified based on morphology and initially called javanica, but is now known as tropical japonica. Examples of this variety include the medium-grain 'Tinawon' and 'Unoy' cultivars, which are grown in the high-elevation rice terraces of the Cordillera Mountains of northern Luzon, Philippines. [15]

Glaszmann (1987) used isozymes to sort O. sativa into six groups: japonica , aromatic, indica, aus, rayada, and ashina. [16]

Garris et al. (2004) used simple sequence repeats to sort O. sativa into five groups: temperate japonica , tropical japonica and aromatic comprise the japonica varieties, while indica and aus comprise the indica varieties. [17] The Garris scheme has held up against newer analyses as of 2019, [18] though one 2014 article argues that rayada is distinct enough to be its own group under japonica. [19]

Genetics

SPL14/LOC4345998 is a gene that regulates the overall architecture/growth habit of the plant. Some of its epialleles increase rice yield. [20] An accurate and usable simple sequence repeat marker set was developed and used to generate a high-density map. [21] A multiplex high-throughput marker assisted selection system has been developed but as with other crop HTMAS systems has proven difficult to customize, costly (both directly and for the equipment), and inflexible. [21] Other molecular breeding tools have produced rice blast resistant cultivars. [22] [23] [21] DNA microarray has been used to advance understanding of hybrid vigor in rice, QTL sequencing has been used to elucidate seedling vigor, and genome wide association study (GWAS) by whole genome sequencing (WGS) has been used to investigate various agronomic traits. [21]

In total, 641 copy number variations are known. [21] Exome capture often reveals new single nucleotide polymorphisms in rice, due to its large genome and high degree of DNA repetition. [21]

Resistance to the rice blast fungus Magnaporthe grisea is provided by various resistance genes including Pi1, Pi54, and Pita. [24] O. sativa uses the plant hormones abscisic acid and salicylic acid to regulate immune responses. Salicylic acid broadly stimulates, and abscisic acid suppresses, immunity to M. grisea; success depends on the balance between their levels. [25] [26]

O. sativa has a large number of insect resistance genes specifically for the brown planthopper. [27] As of 2022, 15 R genes have been cloned and characterized. [27]

See also

Related Research Articles

<span class="mw-page-title-main">Rice</span> Cereal (Oryza sativa)

Rice is a cereal grain and in its domesticated form is the staple food of over half of the world's population, particularly in Asia and Africa. Rice is the seed of the grass species Oryza sativa —or, much less commonly, Oryza glaberrima. Asian rice was domesticated in China some 13,500 to 8,200 years ago; African rice was domesticated in Africa about 3,000 years ago. Rice has become commonplace in many cultures worldwide; in 2021, 787 million tons were produced, placing it fourth after sugarcane, maize, and wheat. Only some 8% of rice is traded internationally. China, India, and Indonesia are the largest consumers of rice. A substantial amount of the rice produced in developing nations is lost after harvest through factors such as poor transport and storage. Rice yields can be reduced by pests including insects, rodents, and birds, as well as by weeds, and by diseases such as rice blast. Traditional rice polycultures such as rice-duck farming, and modern integrated pest management seek to control damage from pests in a sustainable way.

<span class="mw-page-title-main">Oat</span> Cool weather staple grain, animal feed

The oat, sometimes called the common oat, is a species of cereal grain grown for its seed, which is known by the same name. Oats appear to have been domesticated as a secondary crop, as their seeds resembled those of other cereals closely enough for them to be included by early cultivators. Oats tolerate cold winters less well than cereals such as wheat, barley, and rye, but need less summer heat and more rain, making them important in areas such as Northwest Europe that have cool wet summers. They can tolerate low-nutrient and acid soils. Oats grow thickly and vigorously, allowing them to outcompete many weeds, and compared to other cereals are relatively free from diseases.

<i>Oryza</i> Genus of plants

Oryza is a genus of plants in the grass family. It includes the major food crop rice. Members of the genus grow as tall, wetland grasses, growing to 1–2 metres (3–7 ft) tall; the genus includes both annual and perennial species.

<span class="mw-page-title-main">Domestication</span> Selective breeding of plants and animals to serve humans

Domestication is a multi-generational mutualistic relationship in which an animal species, such as humans or leafcutter ants, takes over control and care of another species, such as sheep or fungi, to obtain from them a steady supply of resources, such as meat, milk, or labor. The process is gradual and geographically diffuse, based on trial and error.

<span class="mw-page-title-main">Introgression</span> Transfer of genetic material from one species to another

Introgression, also known as introgressive hybridization, in genetics is the transfer of genetic material from one species into the gene pool of another by the repeated backcrossing of an interspecific hybrid with one of its parent species. Introgression is a long-term process, even when artificial; it may take many hybrid generations before significant backcrossing occurs. This process is distinct from most forms of gene flow in that it occurs between two populations of different species, rather than two populations of the same species.

<i>Oryza rufipogon</i> Species of grass

Oryza rufipogon is a species of flowering plant in the family Poaceae. It is known as brownbeard rice, wild rice, and red rice. In 1965, Oryza nivara was separated off from O. rufipogon. The separation has been questioned, and some sources consider O. nivara to be a synonym of O. rufipogon. O. nivara may be treated as the annual form of O. rufipogon.

<i>Oryza longistaminata</i> Species of grass

Oryza longistaminata is a perennial species of grass from the same genus as cultivated rice. It is native to most of sub-Saharan Africa and Madagascar. It has been introduced into the United States, where it is often regarded as a noxious weed. Its common names are longstamen rice and red rice.

<span class="mw-page-title-main">Aromatic rice</span> Type of rice

Aromatic rice is one of the major types of rice. It is a medium- to long-grained rice. It is known for its nutty aroma and taste, which is caused by the chemical compound 2-acetyl-1-pyrroline. Varieties of aromatic rice include Ambemohar, Basmati, Jasmine, Sona Masuri, Texmati, Tulaipanji, Tulshimala, Wehani, Kalijira, Chinigura, Gobindobhog, Kali Mooch and wild Pecan rice. When cooked, the grains have a light and fluffy texture except for Gobindobhog rice which is sticky in texture.

<span class="mw-page-title-main">Crop wild relative</span> Wild plant closely related to a domesticated plant

A crop wild relative (CWR) is a wild plant closely related to a domesticated plant. It may be a wild ancestor of the domesticated (cultivated) plant or another closely related taxon.

<i>Oryza glaberrima</i> African rice, second most common rice

Oryza glaberrima, commonly known as African rice, is one of the two domesticated rice species. It was first domesticated and grown in West Africa around 3,000 years ago. In agriculture, it has largely been replaced by higher-yielding Asian rice, and the number of varieties grown is declining. It still persists, making up an estimated 20% of rice grown in West Africa. It is now rarely sold in West African markets, having been replaced by Asian strains.

Oryza nivara is a possible wild progenitor of the cultivated rice Oryza sativa. It was separated from Oryza rufipogon in 1965; however, the separation has been questioned, and some sources treat it as a synonym of O. rufipogon. It may be treated as the annual form of O. rufipogon.

<span class="mw-page-title-main">Japonica rice</span> Variety of Asian rice

Japonica rice, sometimes called sinica rice, is one of the two major domestic types of Asian rice varieties. Japonica rice is extensively cultivated and consumed in East Asia, whereas in most other regions indica rice is the dominant type of rice. Japonica rice originated from Central China, where it was first domesticated along the Yangtze River basin approximately 9,500 to 6,000 years ago.

<span class="mw-page-title-main">Rice production in China</span>

Rice production in China is the amount of rice planted, grown, and harvested for consumption in the mainland of China.

<span class="mw-page-title-main">Plant breeding</span> Humans changing traits, ornamental/crops

Plant breeding is the science of changing the traits of plants in order to produce desired characteristics. It has been used to improve the quality of nutrition in products for humans and animals. The goals of plant breeding are to produce crop varieties that boast unique and superior traits for a variety of applications. The most frequently addressed agricultural traits are those related to biotic and abiotic stress tolerance, grain or biomass yield, end-use quality characteristics such as taste or the concentrations of specific biological molecules and ease of processing.

Plant breeding started with sedentary agriculture, particularly the domestication of the first agricultural plants, a practice which is estimated to date back 9,000 to 11,000 years. Initially, early human farmers selected food plants with particular desirable characteristics and used these as a seed source for subsequent generations, resulting in an accumulation of characteristics over time. In time however, experiments began with deliberate hybridization, the science and understanding of which was greatly enhanced by the work of Gregor Mendel. Mendel's work ultimately led to the new science of genetics. Modern plant breeding is applied genetics, but its scientific basis is broader, covering molecular biology, cytology, systematics, physiology, pathology, entomology, chemistry, and statistics (biometrics). It has also developed its own technology. Plant breeding efforts are divided into a number of different historical landmarks.

<span class="mw-page-title-main">Rajeev Kumar Varshney</span> Indian geneticist (born 1973)

Rajeev Kumar Varshney is an Indian agricultural scientist, specializing in genomics, genetics, molecular breeding and capacity building in developing countries. Varshney is currently serving as Director, Western Australian State Agricultural Biotechnology Center; Director, Centre for Crop & Food Innovation; and International Chair in Agriculture & Food Security with the Food Futures Institute at Murdoch University, Australia since Feb 2022. Before joining Murdoch University, Australia he served International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), a global agriculture R&D institute, for more than 16 years in different scientific and research leadership roles including Research Program Director for three global research programs– Grain Legumes, Genetic Gains and Accelerated Crop Improvement Program. He has the onus of establishing and nurturing the Center of Excellence in Genomics & Systems Biology (CEGSB), a globally recognized center for genomics research at ICRISAT that made impacts on improving agriculture and development of human resources in several countries including India, China, Kenya, Ethiopia, Tanzania, Nigeria, Ghana, Mali, Senegal, Burkina Faso, etc. Varshney holds Adjunct/Honorary/Visiting Professor positions at 10 academic institutions in Australia, China, Ghana, Hong Kong and India, including The University of Western Australia, University of Queensland, West Africa Centre for Crop Improvement, University of Hyderabad, Chaudhary Charan Singh University and Professor Jayashankar Telangana State Agricultural University.

<span class="mw-page-title-main">Domestication syndrome</span> Proposed biological phenomenon

Domestication syndrome refers to two sets of phenotypic traits that are common to either domesticated plants or domesticated animals.

A plant genome assembly represents the complete genomic sequence of a plant species, which is assembled into chromosomes and other organelles by using DNA fragments that are obtained from different types of sequencing technology.

<span class="mw-page-title-main">History of rice cultivation</span>

The history of rice cultivation is an interdisciplinary subject that studies archaeological and documentary evidence to explain how rice was first domesticated and cultivated by humans, the spread of cultivation to different regions of the planet, and the technological changes that have impacted cultivation over time.

The agricultural weed syndrome is the set of common traits which make a plant a successful agricultural weed. Most of these traits are not, themselves, phenotypes but are instead methods of rapid adaptation. So equipped, plants of various origins - invasives, natives, mildly successful marginal weeds of agriculture, weeds of other settings - accumulate other characteristics which allow them to compete in an environment with a high degree of human management.

References

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