Desulfobacteraceae

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Desulfobacteraceae
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Myxococcota
Order: Desulfobacterales
Family: Desulfobacteraceae
Kuever, Rainey & Widdel 2006
Genera

The Desulfobacteraceae are a family of Thermodesulfobacteriota. They reduce sulfates to sulfides to obtain energy and are strictly anaerobic. They have a respiratory and fermentative type of metabolism. Some species are chemolithotrophic and use inorganic materials to obtain energy and use hydrogen as their electron donor.

Contents

Biology and biochemistry

Morphology

Desulfobacteraceae vary widely in shape and size across the family. Desulfofaba are straight or slightly curved rods that range in size from 0.8 to 2.1 x 3.2-6.1 μm. Those in the genus Desulfobacterium are spherical or oval shaped and somewhat smaller, ranging in size from 0.9 to 1.3 x 1.5-3.0 μm or 1.5-2.0 x 2.0-2.5 μm. They stain Gram-negative and are not known to produce spores. Some species contain a single polar flagellum used for motility.

Genus and species of Desulfobacteraceae may only be definitively distinguished by analysis of 16S rDNA sequences, but certain genera may be determined through physiological characteristics alone. Desulfofrigus displays an optimal growth rate at very low temperatures compared to other sulfate reducing bacteria. It is also unable to grow in the presence of propionate.

Metabolism

Most species of Desulfobacteraceae use sulfur compounds as their main energy source. The most common source used is sulfate which, through metabolic processes, is reduced to sulfide. In an environment with little or no sulfate, sulfite or elemental sulfur may also be used and reduced into sulfide. In rare cases nitrate may also be used as a food source and reduced into ammonia. They have very efficient sulfate reduction rates (between 12 and 423 mu mol/dm3 day−1) in optimal conditions. [1]

Habitat

Desulfobacteraceae may be found in a range of locations but are most often found in saline and hypersaline waters including salt lakes and the ocean. They have also been found in polar ice in Antarctica. They may be found trapped within ice, floating within the water column, or living on or in other organisms such as sea sponges. [2]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [3] and National Center for Biotechnology Information (NCBI) [4]

16S rRNA based LTP_08_2023 [5] [6] [7] 120 marker proteins based GTDB 08-RS214 [8] [9] [10]
Desulforegulaceae

Desulforegula Rees & Patel 2001

Desulfofabaceae

Desulfofaba Knoblauch, Sahm & Jorgensen 1999

Desulfatiferula Cravo-Laureau et al. 2007

Desulfofaba fastidiosa

Desulfolunaceae

Desulfofrigus Knoblauch, Sahm & Jorgensen 1999

Desulfoluna Suzuki et al. 2008

Desulfobacteraceae

Desulfocella Brandt, Patel & Ingvorsen 1999

Desulfobotulus Kuever, Rainey & Widdel 2009

Desulforapulum Galushko & Kuever 2021

Desulfocicer Galushko & Kuever 2021

Desulfoconvexum Konneke et al. 2013

Desulfobacula Rabus et al. 2000

Desulfospira Finster, Liesack & Tindall 1997

Desulfotignum Kuever et al. 2001

Desulfobacter Widdel 1981

See also

Related Research Articles

<span class="mw-page-title-main">Desulfobacterales</span> Order of bacteria

Desulfobacterales are an order of sulfate-reducing bacteria within the phylum Thermodesulfobacteria. The order contains three families; Desulfobacteraceae, Desulfobulbaceae, and Nitrospinaceae. The bacterium in this order are strict anaerobic respirators, using sulfate or nitrate as the terminal electron acceptor instead of oxygen. Desulfobacterales can degrade ethanol, molecular hydrogen, organic acids, and small hydrocarbons. The bacterium of this order have a wide ecological range and play important environmental roles in symbiotic relationships and nutrient cycling.

<span class="mw-page-title-main">Desulfovibrionales</span> Order of bacteria

Desulfovibrionales are a taxonomic order of bacteria belonging to the phylum Thermodesulfobacteriota, with four families. They are Gram-negative. The majority are sulfate-reducing, with the exception of Lawsonia and Bilophila. All members of this order are obligately anaerobic. Most species are mesophilic, but some are moderate thermophiles.

The Syntrophobacterales are an order of Thermodesulfobacteriota. All genera are strictly anaerobic. Many of the family Syntrophobacteraceae are sulfate-reducing. Some species are motile by using one polar flagellum.

The Desulfobulbaceae are a family of Thermodesulfobacteriota. They reduce sulphates to sulphides to obtain energy and are anaerobic.

<span class="mw-page-title-main">Archaeoglobaceae</span> Family of archaea

Archaeoglobaceae are a family of the Archaeoglobales. All known genera within the Archaeoglobaceae are hyperthermophilic and can be found near undersea hydrothermal vents. Archaeoglobaceae are the only family in the order Archaeoglobales, which is the only order in the class Archaeoglobi.

<span class="mw-page-title-main">Halobacteriales</span> Order of archaea

Halobacteriales are an order of the Halobacteria, found in water saturated or nearly saturated with salt. They are also called halophiles, though this name is also used for other organisms which live in somewhat less concentrated salt water. They are common in most environments where large amounts of salt, moisture, and organic material are available. Large blooms appear reddish, from the pigment bacteriorhodopsin. This pigment is used to absorb light, which provides energy to create ATP. Halobacteria also possess a second pigment, halorhodopsin, which pumps in chloride ions in response to photons, creating a voltage gradient and assisting in the production of energy from light. The process is unrelated to other forms of photosynthesis involving electron transport; however, and halobacteria are incapable of fixing carbon from carbon dioxide.

<i>Chlorobium</i> Genus of bacteria

Chlorobium is a genus of green sulfur bacteria. They are photolithotrophic oxidizers of sulfur and most notably utilise a noncyclic electron transport chain to reduce NAD+. Photosynthesis is achieved using a Type 1 Reaction Centre using bacteriochlorophyll (BChl) a. Two photosynthetic antenna complexes aid in light absorption: the Fenna-Matthews-Olson complex, and the chlorosomes which employ mostly BChl c, d, or e. Hydrogen sulfide is used as an electron source and carbon dioxide its carbon source.

<span class="mw-page-title-main">Campylobacterota</span> Class of bacteria

Campylobacterota are a phylum of Gram-negative bacteria. Only a few genera have been characterized, including the curved to spirilloid Wolinella, Helicobacter, and Campylobacter. Until the 2021 revision of bacterial taxonomy by the ICSP, the entire phylum was classified within the Proteobacteria as the Epsilonproteobacteria.

<span class="mw-page-title-main">Desulfurococcales</span> Order of archaea

The Desulfurococcales is an order of the Thermoprotei, part of the kingdom Archaea. The order encompasses some genera which are all thermophilic, autotrophs which utilise chemical energy, typically by reducing sulfur compounds using hydrogen. Desulfurococcales cells are either regular or irregular coccus in shape, with forms of either discs or dishes. These cells can be single, in pairs, in short chains, or in aciniform formation.

Chloracidobacterium is a genus of the Acidobacteriota. It is currently assigned to the family Acidobacteriaceae, but phylogenetic evidence suggests that it belongs in Blastocatellia.

Deferribacter is a genus in the phylum Deferribacterota (Bacteria).

Dehalogenimonas is a genus in the phylum Chloroflexota (Bacteria). Members of the genus Dehalogenimonas can be referred to as dehalogenimonads.

Sulfurimonas is a bacterial genus within the class of Campylobacterota, known for reducing nitrate, oxidizing both sulfur and hydrogen, and containing Group IV hydrogenases. This genus consists of four species: Sulfurimonas autorophica, Sulfurimonas denitrificans, Sulfurimonas gotlandica, and Sulfurimonas paralvinellae. The genus' name is derived from "sulfur" in Latin and "monas" from Greek, together meaning a “sulfur-oxidizing rod”. The size of the bacteria varies between about 1.5-2.5 μm in length and 0.5-1.0 μm in width. Members of the genus Sulfurimonas are found in a variety of different environments which include deep sea-vents, marine sediments, and terrestrial habitats. Their ability to survive in extreme conditions is attributed to multiple copies of one enzyme. Phylogenetic analysis suggests that members of the genus Sulfurimonas have limited dispersal ability and its speciation was affected by geographical isolation rather than hydrothermal composition. Deep ocean currents affect the dispersal of Sulfurimonas spp., influencing its speciation. As shown in the MLSA report of deep-sea hydrothermal vents Campylobacterota, Sulfurimonas has a higher dispersal capability compared with deep sea hydrothermal vent thermophiles, indicating allopatric speciation.

Sulfurovum is a genus within the Campylobacterota which was first described in 2004 with the isolation and description of the type species Sulfurovum lithotrophicum from Okinawa trough hydrothermal sediments. Named for their ability to oxidize sulfur and their egg-like shape, cells are gram-negative, coccoid to short rods. Mesophilic chemolithoautotrophic growth occurs by oxidation of sulfur compounds coupled to the reduction of nitrate or molecular oxygen.

Desulfurella is a lithoautotrophic bacteria genus from the family of Desulfobacteraceae.

Desulfobotulus is a Gram-negative, anaerobic, non-spore-forming and motile bacteria genus from the family of Desulfobacteraceae.

Desulfotignum is a Gram-negative and strictly anaerobic bacteria with a single polar flagellum genus from the family of Desulfobacteraceae.

Hippea is an obligate anaerobic and moderately thermophilic bacteria genus from the family of Desulfobacteraceae. Hippea is named after the German microbiologist Hans Hippe.

Nitratiruptor sp. is a genus of deep sea gram-negative Campylobacterota isolated from Iheya North Hydrothermal field in Okinawa Trough (Japan). This rod-shaped microorganism grows chemolithoautotrophically in a wide variety of electron donors and acceptors in absence of light and oxygen. It is also a thermophilic group capable of growing within the range of 37–65 °C with the optimal at 55 °C.

The Thermodesulfobacteriaceae are a class of sulfate-reducing bacteria.

References

Notes
  1. "Web of Science [v.5.19] - All Databases Full Record". apps.webofknowledge.com. Retrieved 2015-10-16.
  2. Ahn, Young-Beom; Kerkhof, Lee J.; Häggblom, Max M. (2009-09-01). "Desulfoluna spongiiphila sp. nov., a dehalogenating bacterium in the Desulfobacteraceae from the marine sponge Aplysina aerophoba". International Journal of Systematic and Evolutionary Microbiology. 59 (Pt 9): 2133–2139. doi: 10.1099/ijs.0.005884-0 . ISSN   1466-5026. PMID   19605712.
  3. A.C. Parte; et al. "Desulfobacteraceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-09-09.
  4. Sayers; et al. "Desulfobacteraceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-09-09.
  5. "The LTP" . Retrieved 20 November 2023.
  6. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  7. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  8. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  9. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
Sources