Haplogroup W

Last updated
Haplogroup W
Possible time of origin23,900 ybp [1]
Possible place of origin Western Asia
Ancestor N2
DescendantsW1, C194T, W3, W4, W5, W6, W7
Defining mutations195 204 207 1243 3505 5460 8251 8994 11947 15884C 16292 [2]

Haplogroup W is a human mitochondrial DNA (mtDNA) haplogroup.

Contents

Origin

Haplogroup W is believed to have originated around 23,900 years ago in Western Asia. [1] It is descended from the haplogroup N2.

Distribution

Projected spatial distribution of haplogroup W. Spatial frequency distribution of haplogroup W.png
Projected spatial distribution of haplogroup W.

Haplogroup W is found in Europe, Western Asia, and South Asia. [3] It is widely distributed at low frequencies, with a high concentration in Northern Pakistan. [4] Haplogroup W is also found in the Maghreb among Algerians (1.08%-3.23%) [5] and in Siberia among Yakuts (6/423 = 1.42% [6] ).

Additionally, the clade has been observed among ancient Egyptian mummies excavated at the Abusir el-Meleq archaeological site in Middle Egypt, which date from the Ptolemaic Kingdom. [7]

The W5 subclade has been found in a fossil associated with the Starčevo culture (Lánycsók site; 1/1 or 100%). [8]

Ancient DNA analysis found that the medieval individual Sungir 6 (730-850 cal BP) belonged to the W3a1 subclade. [9]

Subclades

Tree

Phylogenetic tree of haplogroups I (left) and W (right). Kya in the left scale bar stands for thousand years ago. Phylogenetic tree of haplogroups N1a1b and W.png
Phylogenetic tree of haplogroups I (left) and W (right). Kya in the left scale bar stands for thousand years ago.

This phylogenetic tree of haplogroup W subclades is based on the paper by Mannis van Oven and Manfred Kayser Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation [2] and subsequent published research.

See also

Phylogenetic tree of human mitochondrial DNA (mtDNA) haplogroups

  Mitochondrial Eve (L)  
L0 L1–6 
L1 L2   L3    L4 L5 L6
M N  
CZ D E G Q   O A S R   I W X Y
C Z B F R0   pre-JT   P   U
HV JT K
H V J T

Related Research Articles

<span class="mw-page-title-main">Mitochondrial Eve</span> Matrilineal most recent common ancestor of all living humans

In human genetics, the Mitochondrial Eve is the matrilineal most recent common ancestor (MRCA) of all living humans. In other words, she is defined as the most recent woman from whom all living humans descend in an unbroken line purely through their mothers and through the mothers of those mothers, back until all lines converge on one woman.

<span class="mw-page-title-main">Mitochondrial DNA</span> DNA located in mitochondria

Mitochondrial DNA is the DNA located in mitochondria, cellular organelles within eukaryotic cells that convert chemical energy from food into a form that cells can use, such as adenosine triphosphate (ATP). Mitochondrial DNA is only a small portion of the DNA in a eukaryotic cell; most of the DNA can be found in the cell nucleus and, in plants and algae, also in plastids such as chloroplasts.

<span class="mw-page-title-main">Cambridge Reference Sequence</span> The reference sequence of the human mitochondrial DNA

The Cambridge Reference Sequence (CRS) for human mitochondrial DNA was first announced in 1981.

<span class="mw-page-title-main">Haplogroup M (mtDNA)</span> Widespread human mitochondrial DNA grouping indicating common ancestry

Haplogroup M is a human mitochondrial DNA (mtDNA) haplogroup. An enormous haplogroup spanning all the continents, the macro-haplogroup M, like its sibling the macro-haplogroup N, is a descendant of the haplogroup L3.

Haplogroup K, formerly Haplogroup UK, is a human mitochondrial DNA (mtDNA) haplogroup. It is defined by the HVR1 mutations 16224C and 16311C. It is now known that K is a subclade of U8.

Haplogroup T is a human mitochondrial DNA (mtDNA) haplogroup. It is believed to have originated around 25,100 years ago in the Near East.

Haplogroup V is a human mitochondrial DNA (mtDNA) haplogroup. The clade is believed to have originated over 14,000 years ago in Southern Europe.

Haplogroup U is a human mitochondrial DNA haplogroup (mtDNA). The clade arose from haplogroup R, likely during the early Upper Paleolithic. Its various subclades are found widely distributed across Northern and Eastern Europe, Central, Western and South Asia, as well as North Africa, the Horn of Africa, and the Canary Islands.

<span class="mw-page-title-main">Haplogroup N (mtDNA)</span> Widespread human mitochondrial DNA grouping indicating common ancestry

Haplogroup N is a human mitochondrial DNA (mtDNA) clade. A macrohaplogroup, its descendant lineages are distributed across many continents. Like its sibling macrohaplogroup M, macrohaplogroup N is a descendant of the haplogroup L3.

<span class="mw-page-title-main">Haplogroup C (mtDNA)</span>

In human mitochondrial genetics, Haplogroup C is a human mitochondrial DNA (mtDNA) haplogroup.

<span class="mw-page-title-main">MT-ND4</span> Mitochondrial gene coding for a protein involved in the respiratory chain

MT-ND4 is a gene of the mitochondrial genome coding for the NADH-ubiquinone oxidoreductase chain 4 (ND4) protein. The ND4 protein is a subunit of NADH dehydrogenase (ubiquinone), which is located in the mitochondrial inner membrane and is the largest of the five complexes of the electron transport chain. Variations in the MT-ND4 gene are associated with age-related macular degeneration (AMD), Leber's hereditary optic neuropathy (LHON), mesial temporal lobe epilepsy (MTLE) and cystic fibrosis.

<span class="mw-page-title-main">MT-ND3</span> Mitochondrial protein-coding gene whose product is involved in the respiratory chain

MT-ND3 is a gene of the mitochondrial genome coding for the NADH dehydrogenase 3 (ND3) protein. The ND3 protein is a subunit of NADH dehydrogenase (ubiquinone), which is located in the mitochondrial inner membrane and is the largest of the five complexes of the electron transport chain. Variants of MT-ND3 are associated with Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS), Leigh's syndrome (LS) and Leber's hereditary optic neuropathy (LHON).

<span class="mw-page-title-main">Genetic history of the Middle East</span>

The genetic history of the Middle East is the subject of research within the fields of human population genomics, archaeogenetics and Middle Eastern studies. Researchers use Y-DNA, mtDNA, and other autosomal DNAs to identify the genetic history of ancient and modern populations of Egypt, Persia, Mesopotamia, Anatolia, Arabia, the Levant, and other areas.

In human genetics, Haplogroup IWX was a human mitochondrial DNA (mtDNA) haplogroup.

Haplogroup H is a human mitochondrial DNA (mtDNA) haplogroup. The clade is believed to have originated in Southwest Asia, near present day Syria, around 20,000 to 25,000 years ago. Mitochondrial haplogroup H is today predominantly found in Europe, and is believed to have evolved before the Last Glacial Maximum (LGM). It first expanded in the northern Near East and Southern Caucasus soon, and later migrations from Iberia suggest that the clade reached Europe before the Last Glacial Maximum. The haplogroup has also spread to parts of Africa, Siberia and Inner Asia. Today, around 40% of all maternal lineages in Europe belong to haplogroup H.

Haplogroup R0 is a human mitochondrial DNA (mtDNA) haplogroup.

In human mitochondrial genetics, Haplogroup K1a1b1a is a human mitochondrial DNA (mtDNA) haplogroup.

<span class="mw-page-title-main">Macro-haplogroup L</span>

In human mitochondrial genetics, L is the mitochondrial DNA macro-haplogroup that is at the root of the anatomically modern human mtDNA phylogenetic tree. As such, it represents the most ancestral mitochondrial lineage of all currently living modern humans, also dubbed "Mitochondrial Eve".

Genetic studies of Jews are part of the population genetics discipline and are used to analyze the chronology of Jewish migration accompanied by research in other fields, such as history, linguistics, archaeology, and paleontology. These studies investigate the origins of various Jewish ethnic divisions. In particular, they examine whether there is a common genetic heritage among them. The medical genetics of Jews are studied for population-specific diseases.

Population genetics research has been conducted on the ancestry of the modern Turkish people in Turkey. Such studies are relevant for the demographic history of the population as well as health reasons, such as population specific diseases. Some studies have sought to determine the relative contributions of the Turkic peoples of Central Asia, from where the Seljuk Turks began migrating to Anatolia after the Battle of Manzikert in 1071, which led to the establishment of the Anatolian Seljuk Sultanate in the late 11th century, and prior populations in the area who were culturally assimilated during the Seljuk and the Ottoman periods.

References

  1. 1 2 Soares, Pedro; Luca Ermini; Noel Thomson; Maru Mormina; Teresa Rito; Arne Röhl; Antonio Salas; Stephen Oppenheimer; Vincent Macaulay; Martin B. Richards (4 Jun 2009). "Supplemental Data Correcting for Purifying Selection: An Improved Human Mitochondrial Molecular Clock". The American Journal of Human Genetics. 84 (6): 82–93. doi:10.1016/j.ajhg.2009.05.001. PMC   2694979 . PMID   19500773.
  2. 1 2 van Oven, Mannis; Manfred Kayser (13 Oct 2008). "Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation". Human Mutation. 30 (2): E386–E394. doi: 10.1002/humu.20921 . PMID   18853457. S2CID   27566749.
  3. Petraglia, Michael D.; Allchin, Bridget (2007). The Evolution and History of Human Populations in South Asia: Inter-disciplinary Studies in Archaeology, Biological Anthropology, Linguistics and Genetics. Springer Science & Business Media. p. 237. ISBN   978-1-4020-5562-1.
  4. Meit Metspalu et al., Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans. BMC Genetics, 2004
  5. Asmahan Bekada; Lara R. Arauna; Tahria Deba; Francesc Calafell; Soraya Benhamamouch; David Comas (September 24, 2015). "Genetic Heterogeneity in Algerian Human Populations". PLOS ONE. 10 (9): e0138453. Bibcode:2015PLoSO..1038453B. doi: 10.1371/journal.pone.0138453 . PMC   4581715 . PMID   26402429.; S5 Table
  6. Sardana A Fedorova, Maere Reidla, Ene Metspalu, et al., "Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia." BMC Evolutionary Biology 2013, 13:127. http://www.biomedcentral.com/1471-2148/13/127
  7. Schuenemann, Verena J.; et al. (2017). "Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods". Nature Communications. 8: 15694. Bibcode:2017NatCo...815694S. doi:10.1038/ncomms15694. PMC   5459999 . PMID   28556824.
  8. Mark Lipson; et al. (2017). "Parallel palaeogenomic transects reveal complex genetic history of early European farmers". Nature. 551 (7680): 368–372. Bibcode:2017Natur.551..368L. doi:10.1038/nature24476. PMC   5973800 . PMID   29144465 . Retrieved 18 November 2017.
  9. Sikora, Martin; Seguin-Orlando, Andaine; Sousa, Vitor C.; Albrechtsen, Anders; Korneliussen, Thorfinn; Ko, Amy; Rasmussen, Simon; Dupanloup, Isabelle; Nigst, Philip R.; Bosch, Marjolein D.; Renaud, Gabriel; Allentoft, Morten E.; Margaryan, Ashot; Vasilyev, Sergey V.; Veselovskaya, Elizaveta V.; Borutskaya, Svetlana B.; Deviese, Thibaut; Comeskey, Dan; Higham, Tom; Manica, Andrea; Foley, Robert; Meltzer, David J.; Nielsen, Rasmus; Excoffier, Laurent; Lahr, Marta Mirazon; Orlando, Ludovic; Willerslev, Eske (2017). "Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers". Science. 358 (6363): 659–662. Bibcode:2017Sci...358..659S. doi: 10.1126/science.aao1807 . ISSN   0036-8075. PMID   28982795.
  10. Homo sapiens isolate 92_Tor793_W1 mitochondrion, complete genome GenBank: KF146272.1.
  11. Homo sapiens isolate poz377 haplogroup W1 mitochondrion, complete genome GenBank: MT588229.1.
  12. Homo sapiens haplogroup W1* mitochondrion, complete genome GenBank: KC911537.1.
  13. Homo sapiens isolate E8_fi_ath haplogroup W1a mitochondrion, complete genome GenBank: MN516604.1.
  14. Homo sapiens isolate S90_fi_ath haplogroup W1b1 mitochondrion, complete genome GenBank: MN516694.1.
  15. Homo sapiens haplogroup W1c mitochondrion, complete genome GenBank: KC911592.1.
  16. Brook, Kevin Alan (2022). The Maternal Genetic Lineages of Ashkenazic Jews. Academic Studies Press. p. 121. doi:10.2307/j.ctv33mgbcn. ISBN   978-1644699843. S2CID   254519342.
  17. Homo sapiens isolate 1549629 mitochondrion, complete genome GenBank: JX153072.1.
  18. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 Phylogeny of mtDNA haplogroup W according to YFull
  19. "Homo sapiens isolate AZB5 mitochondrion, complete genome". 4 April 2012.
  20. "Homo sapiens isolate NG14 mitochondrion, complete genome". 30 June 2017.
  21. Homo sapiens isolate Ararat_11 haplogroup W3a1 mitochondrion, complete genome GenBank: MF362752.1.
  22. "Homo sapiens isolate KUR94 mitochondrion, complete genome". 4 April 2012.
  23. "Homo sapiens isolate 104_Tor787_W3a1 mitochondrion, complete genome". 24 August 2013.
  24. Homo sapiens isolate 94_Tor782_W3a1 mitochondrion, complete genome GenBank: KF146273.1.
  25. "Homo sapiens isolate 100_Tor794_W3a1 mitochondrion, complete genome". 24 August 2013.
  26. "Homo sapiens isolate csct_007509 mitochondrion, complete genome". 2 March 2017.
  27. "Homo sapiens isolate PG2012_499 mitochondrion, complete genome". 20 July 2020.
  28. "Homo sapiens isolate 101_Tor783_W3a1 mitochondrion, complete genome". 24 August 2013.
  29. "Homo sapiens isolate 6130 mitochondrion, complete genome". 2 March 2017.
  30. "Homo sapiens isolate A10-59 mitochondrion, complete genome". 11 December 2018.
  31. Homo sapiens isolate 105_Tor769_W3a1 mitochondrion, complete genome GenBank: KF146277.1.
  32. Brook, Kevin Alan (2022). The Maternal Genetic Lineages of Ashkenazic Jews. Academic Studies Press. p. 122. doi:10.2307/j.ctv33mgbcn. ISBN   978-1644699843. S2CID   254519342.
  33. "Homo sapiens isolate 106_Tor777_W3a1b mitochondrion, complete genome". 24 August 2013.
  34. 1 2 Olivieri, Anna; Pala, Maria; Gandini, Francesca; Kashani, Baharak Hooshiar; Perego, Ugo A.; Woodward, Scott R.; Grugni, Viola; Battaglia, Vincenza; Semino, Ornella; Achilli, Alessandro; Richards, Martin B.; Torroni, Antonio (31 July 2013). "Mitogenomes from Two Uncommon Haplogroups Mark Late Glacial/Postglacial Expansions from the Near East and Neolithic Dispersals within Europe". PLOS ONE. 8 (7): e70492. Bibcode:2013PLoSO...870492O. doi: 10.1371/journal.pone.0070492 . PMC   3729697 . PMID   23936216.
  35. "Homo sapiens isolate Daur mitochondrion sequence". 4 September 2022.
  36. Homo sapiens haplogroup W3a1d mitochondrion, complete genome GenBank: KY849398.1.
  37. "Homo sapiens isolate D27 haplogroup W3a1d1 mitochondrion, complete genome". 4 July 2018.
  38. Homo sapiens isolate 257_Sb haplogroup W3a1d mitochondrion, complete genome GenBank: MK617275.1.
  39. Duggan AT, Whitten M, Wiebe V, Crawford M, Butthof A, et al. (2013), "Investigating the Prehistory of Tungusic Peoples of Siberia and the Amur-Ussuri Region with Complete mtDNA Genome Sequences and Y-chromosomal Markers." PLoS ONE 8(12): e83570. doi:10.1371/journal.pone.0083570
  40. Palanichamy, Malliya Gounder; Mitra, Bikash; Zhang, Cai-Ling; Debnath, Monojit; Li, Gui-Mei; Wang, Hua-Wei; Agrawal, Suraksha; Chaudhuri, Tapas Kumar; Zhang, Ya-Ping (June 2015). "West Eurasian mtDNA lineages in India: an insight into the spread of the Dravidian language and the origins of the caste system". Human Genetics. 134 (6): 637–647. doi:10.1007/s00439-015-1547-4. PMID   25832481. S2CID   253980915.
  41. "Homo sapiens isolate 1671251 mitochondrion, complete genome". 18 September 2014.
  42. Homo sapiens haplogroup W3b mitochondrion, complete genome GenBank: MG910309.1.
  43. "Homo sapiens isolate Assyrian_C165_W3b mitochondrion, complete genome". 21 October 2019.
  44. Homo sapiens isolate Artsakh_54 haplogroup W3b mitochondrion, complete genome GenBank: MF362844.1.
  45. "Homo sapiens isolate C266_Banteay_Meanchey_W3b mitochondrion, complete genome". 30 December 2018.
  46. Brook, Kevin Alan (2022). The Maternal Genetic Lineages of Ashkenazic Jews. Academic Studies Press. p. 123. doi:10.2307/j.ctv33mgbcn. ISBN   978-1644699843. S2CID   254519342.
  47. "Homo sapiens isolate 75401 mitochondrion, complete genome". October 2013.
  48. "Homo sapiens isolate K274 haplogroup W4* mitochondrion, complete genome". 2 September 2023.
  49. "Homo sapiens isolate PG2012_433 mitochondrion, complete genome". 20 July 2020.
  50. "Homo sapiens isolate NG118 mitochondrion, complete genome". 30 June 2017.
  51. "Homo sapiens isolate S-917627 mitochondrion, complete genome". 27 January 2022.
  52. "Homo sapiens isolate ORK228 mitochondrion, complete genome". 17 January 2022.
  53. "Homo sapiens isolate LM97mt mitochondrion, partial genome". 21 April 2019.
  54. Homo sapiens isolate S79_fi_ath haplogroup W4a1 mitochondrion, complete genome GenBank: MN516681.1.
  55. "Homo sapiens isolate KUR92 mitochondrion, complete genome". 4 April 2012.
  56. "Homo sapiens isolate 147_Tor780_W4 mitochondrion, complete genome". 24 August 2013.
  57. "Homo sapiens isolate CHF141 mitochondrion, complete genome". 9 November 2021.
  58. "Homo sapiens isolate 107623 mitochondrion, complete genome". October 2013.
  59. "Homo sapiens isolate D479 mitochondrion, complete genome". 11 December 2018.
  60. "Homo sapiens isolate 27Sb mitochondrion, complete genome". 22 February 2022.
  61. "Homo sapiens isolate 05-113 mitochondrion, complete genome". 6 June 2023.
  62. "Homo sapiens isolate 177_Tor770_W5 mitochondrion, complete genome". 24 August 2013.
  63. "Homo sapiens haplogroup W5 mitochondrion, complete genome". 20 November 2013.
  64. "Homo sapiens haplogroup W5 mitochondrion, complete genome". 23 July 2022.
  65. "Homo sapiens isolate 2486313 mitochondrion, complete genome". 18 September 2014.
  66. "Homo sapiens isolate 168_Tor772_W5a1a mitochondrion, complete genome". 24 August 2013.
  67. García-Olivares, Víctor; Rubio-Rodríguez, Luis A.; Muñoz-Barrera, Adrián; Díaz-de Usera, Ana; Jáspez, David; Iñigo-Campos, Antonio; Rodríguez Pérez, María Del Cristo; Cabrera de León, Antonio; Lorenzo-Salazar, José M.; González-Montelongo, Rafaela; Cabrera, Vicente M.; Flores, Carlos (20 January 2023). "Digging into the admixture strata of current-day Canary Islanders based on mitogenomes". iScience. 26 (1): 105907. Bibcode:2023iSci...26j5907G. doi:10.1016/j.isci.2022.105907. PMC   9840145 . PMID   36647378.
  68. Homo sapiens haplogroup W5a1a mitochondrion, complete genome GenBank: KX518741.1.
  69. "Homo sapiens isolate II_50_BG haplogroup W5a mitochondrion, complete genome". 2 April 2018.
  70. Homo sapiens isolate 188_Tor779_W6 mitochondrion, complete genome GenBank: KF146287.1.
  71. Homo sapiens haplogroup W6 mitochondrion, complete genome GenBank: KC911449.1.
  72. Homo sapiens isolate NOS10 mitochondrion, complete genome GenBank: JQ245723.1.
  73. Homo sapiens isolate 205_Tor786_W6b mitochondrion, complete genome GenBank: KF146290.1.
  74. Homo sapiens haplotype W6c1a mitochondrion, complete genome GenBank: KX363871.1.
  75. Homo sapiens haplotype W6c mitochondrion, complete genome GenBank: KF553923.1.
  76. Homo sapiens isolate 32_Mu mitochondrion, complete genome GenBank: MK491385.1.