Heterocyclic compound

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Structures and names of common heterocyclic compounds Heterocycle compounds.jpg
Structures and names of common heterocyclic compounds
Pyridine, a heterocyclic compound Pyridine.svg
Pyridine, a heterocyclic compound

A heterocyclic compound or ring structure is a cyclic compound that has atoms of at least two different elements as members of its ring(s). [1] Heterocyclic organic chemistry is the branch of organic chemistry dealing with the synthesis, properties, and applications of organic heterocycles. [2]

Contents

Examples of heterocyclic compounds include all of the nucleic acids, the majority of drugs, most biomass (cellulose and related materials), and many natural and synthetic dyes. More than half of known compounds are heterocycles. [3] 59% of US FDA-approved drugs contain nitrogen heterocycles. [4]

Classification

The study of organic heterocyclic chemistry focuses especially on organic unsaturated derivatives, and the preponderance of work and applications involves unstrained organic 5- and 6-membered rings. Included are pyridine, thiophene, pyrrole, and furan. Another large class of organic heterocycles refers to those fused to benzene rings. For example, the fused benzene derivatives of pyridine, thiophene, pyrrole, and furan are quinoline, benzothiophene, indole, and benzofuran, respectively. The fusion of two benzene rings gives rise to a third large family of organic compounds. Analogs of the previously mentioned heterocycles for this third family of compounds are acridine, dibenzothiophene, carbazole, and dibenzofuran, respectively.

Heterocyclic organic compounds can be usefully classified based on their electronic structure. The saturated organic heterocycles behave like the acyclic derivatives. Thus, piperidine and tetrahydrofuran are conventional amines and ethers, with modified steric profiles. Therefore, the study of organic heterocyclic chemistry focuses on organic unsaturated rings.

Inorganic rings

Some heterocycles contain no carbon. Examples are borazine (B3N3 ring), hexachlorophosphazenes (P3N3 rings), and tetrasulfur tetranitride S4N4. In comparison with organic heterocycles, which have numerous commercial applications, inorganic ring systems are mainly of theoretical interest. IUPAC recommends the Hantzsch-Widman nomenclature for naming heterocyclic compounds. [5]

Notes on lists

3-membered rings

Although subject to ring strain, 3-membered heterocyclic rings are well characterized. [6]

Three-membered rings with one heteroatom
HeteroatomSaturatedUnsaturated
Boron Borirane Borirene
Nitrogen Aziridine Azirine
Oxygen Oxirane
(ethylene oxide, epoxides)
Oxirene
Phosphorus Phosphirane Phosphirene
Sulfur Thiirane
(ethylene sulfide, episulfides)
Thiirene
Three-membered rings with two heteroatoms
HeteroatomsSaturatedUnsaturated
2 × Nitrogen Diaziridine Diazirine
Nitrogen + Oxygen Oxaziridine Oxazirine
Nitrogen + Sulfur Thiaziridine Thiazirine
2 × Oxygen Dioxirane (highly unstable)
2 × Sulfur Dithiirane (highly unstable)

4-membered rings

Four-membered rings with one heteroatom
HeteroatomSaturatedUnsaturated
Boron Boretane Borete
Nitrogen Azetidine Azete
Oxygen Oxetane Oxete
Phosphorus Phosphetane Phosphete
Sulfur Thietane Thiete
Four-membered rings with two heteroatoms
HeteroatomsSaturatedUnsaturated
2 × Nitrogen Diazetidine Diazete
2 × Oxygen Dioxetane Dioxete
2 × Sulfur Dithietane Dithiete

5-membered rings

The 5-membered ring compounds containing two heteroatoms, at least one of which is nitrogen, are collectively called the azoles. Thiazoles and isothiazoles contain a sulfur and a nitrogen atom in the ring. Dithioles have two sulfur atoms.

A large group of 5-membered ring compounds with three or more heteroatoms also exists. One example is the class of dithiazoles, which contain two sulfur atoms and one nitrogen atom.

Five-membered rings with one heteroatom
HeteroatomSaturatedUnsaturated
Antimony Stibolane Stibole
Arsenic Arsolane Arsole
Bismuth Bismolane Bismole
Boron Borolane Borole
Germanium Germolane Germole
Nitrogen Pyrrolidine
(Azolidine not used)
Pyrrole
(Azole not used)
Pyrroline (partially unsaturated)
Oxygen Oxolane Furan
(Oxole not used)
Phosphorus Phospholane Phosphole
Selenium Selenolane Selenophene
Silicon Silolane Silole
Sulfur Thiolane Thiophene
(Thiole not used)
Tellurium Tellurolane Tellurophene
Tin Stannolane Stannole
Five-membered rings with two heteroatoms
HeteroatomsSaturatedUnsaturated (and partially unsaturated)
2 × Nitrogen Pyrazolidine
Imidazolidine
Pyrazole ( Pyrazoline )
Imidazole ( Imidazoline )
Nitrogen + Oxygen Oxazolidine
Isoxazolidine
Oxazole (Oxazoline)
Isoxazole (Isoxazoline)
Nitrogen + Sulfur Thiazolidine
Isothiazolidine
Thiazole (Thiazoline)
Isothiazole (Isothiazoline)
Oxygen + Sulfur Oxathiolane
Isoxathiolane
Oxathiole
Isoxathiole
2 × Oxygen Dioxolane Dioxole
2 × Sulfur Dithiolane Dithiole
Five-membered rings with three heteroatoms
HeteroatomsSaturatedUnsaturated
3 × Nitrogen Triazole
2 Nitrogen + Oxygen Oxadiazole
2 Nitrogen + Sulfur Thiadiazole
Nitrogen + 2 Oxygen Dioxazole
Nitrogen + 2 Sulfur Dithiazole
Five-membered rings with four heteroatoms
HeteroatomsSaturatedUnsaturated
4 × Nitrogen Tetrazole
3 Nitrogen + Oxygen Oxatriazole
3 Nitrogen + Sulfur Thiatriazole
Five-membered rings with five heteroatoms
HeteroatomsSaturatedUnsaturated
5 × Nitrogen Pentazole
4 Nitrogen + Oxygen Oxatetrazole
4 Nitrogen + Sulfur Thiatetrazole

6-membered rings

The 6-membered ring compounds containing two heteroatoms, at least one of which is nitrogen, are collectively called the azines. Thiazines contain a sulfur and a nitrogen atom in the ring. Dithiines have two sulfur atoms.

Six-membered rings with one heteroatom
HeteroatomSaturatedUnsaturatedIons
Antimony Stibinane Stibinine [7] Stibatabenzene cation
Arsenic Arsinane Arsinine Arsatabenzene cation
Bismuth Bisminane Bismine [8] Bismatabenzene cation
Boron Borinane Borinine Boratabenzene anion
Germanium Germinane Germine
Nitrogen Piperidine
(Azinane not used)
Pyridine
(Azine not used)
Pyridinium cation
Oxygen Oxane Pyran
(Oxine not used)
Pyrylium cation
Phosphorus Phosphinane Phosphinine Phosphatabenzene cation
Selenium Selenane Selenopyran [9] Selenopyrylium cation
Silicon Silinane Siline
Sulfur Thiane Thiopyran
(Thiine not used)
Thiopyrylium cation
Tellurium Tellurane Telluropyran Telluropyrylium cation
Tin Stanninane Stannine
Six-membered rings with two heteroatoms
HeteroatomsSaturatedUnsaturated
2 × Nitrogen Piperazine Pyrazine
Pyrimidine
Pyridazine
Nitrogen + Oxygen Morpholine Oxazine
Nitrogen + Sulfur Thiomorpholine Thiazine
Oxygen + Sulfur Oxathiane Oxathiin
2 × Oxygen Dioxane Dioxin
2 × Sulfur Dithiane Dithiin
Six-membered rings with three heteroatoms
HeteroatomsSaturatedUnsaturated
3 × Nitrogen Triazinane Triazine
3 × Oxygen Trioxane Trioxin
3 × Sulfur Trithiane Trithiin
Six-membered rings with four heteroatoms
HeteroatomsSaturatedUnsaturated
4 × Nitrogen Tetrazine
2 Nitrogen + 2 Boron Carborazine

Six-membered rings with five heteroatoms
The hypothetical chemical compound with five nitrogen heteroatoms would be pentazine.

Six-membered rings with six heteroatoms
The hypothetical chemical compound with six nitrogen heteroatoms would be hexazine. Borazine is a six-membered ring with three nitrogen heteroatoms and three boron heteroatoms.

7-membered rings

In a 7-membered ring, the heteroatom must be able to provide an empty π-orbital (e.g. boron) for "normal" aromatic stabilization to be available; otherwise, homoaromaticity may be possible.

Seven-membered rings with one heteroatom
HeteroatomSaturatedUnsaturated
Boron Borepane Borepine
Nitrogen Azepane Azepine
Oxygen Oxepane Oxepine
Phosphorus Phosphepane Phosphepine
Sulfur Thiepane Thiepine
Seven-membered rings with two heteroatoms
HeteroatomsSaturatedUnsaturated
2 × Nitrogen Diazepane Diazepine
Nitrogen + Oxygen Oxazepane Oxazepine
Nitrogen + Sulfur Thiazepane Thiazepine

8-membered rings

HeteroatomSaturatedUnsaturated
Nitrogen Azocane Azocine
Oxygen Oxocane Oxocine
Sulfur Thiocane Thiocine

Borazocine is a eight-membered ring with four nitrogen heteroatoms and four boron heteroatoms.

9-membered rings

HeteroatomSaturatedUnsaturated
Nitrogen Azonane Azonine
Oxygen Oxonane Oxonine
Sulfur Thionane Thionine

Images of rings with one heteroatom

SaturatedUnsaturated
Heteroatom Nitrogen Oxygen Sulfur NitrogenOxygenSulfur
3-atom ring Aziridine Oxirane Thiirane Azirine Oxirene Thiirene
Aziridin.svg Ethylene oxide.svg Thiiran.svg Azirin.svg Oxiren.svg Thiiren.svg
4-atom ring Azetidine Oxetane Thietane Azete Oxete Thiete
Azetidine structure.svg Oxetan.png Thietan.png Azete structure.svg Oxetene.svg Thietene.png
5-atom ring Pyrrolidine Oxolane Thiolane Pyrrole Furan Thiophene
Pyrrolidine-Structural Formula V.1.svg Tetrahydrofuran acsv.svg Tetrahydrothiophen.png Pyrrol2.svg Furan.svg Thiophen.svg
6-atom ring Piperidine Oxane Thiane Pyridine Pyran Thiopyran
Piperidin.svg Tetrahydropyran (vzorec).svg Thiane3.svg Pyridin.svg Pyran.svg 1,2-Thiapyran.svg
7-atom ring Azepane Oxepane Thiepane Azepine Oxepine Thiepine
Azepane.svg Oxepan.png Thiepan.svg Azepine-2D-skeletal.png Oxepine.svg Thiepine.png
8-atom ring Azocane Oxocane Thiocane Azocine Oxocine Thiocine
Azocane.png Oxocano.png Tiocano.png Azocine.png Oxocinio.png Tiocinio.png
9-atom ring Azonane Oxonane Thionane Azonine Oxonine Thionine
Azonano.png Oxonano.png Tionano.png Azonina.png Oxonina.png Tionina.png

Fused/condensed rings

Heterocyclic rings systems that are formally derived by fusion with other rings, either carbocyclic or heterocyclic, have a variety of common and systematic names. For example, with the benzo-fused unsaturated nitrogen heterocycles, pyrrole provides indole or isoindole depending on the orientation. The pyridine analog is quinoline or isoquinoline. For azepine, benzazepine is the preferred name. Likewise, the compounds with two benzene rings fused to the central heterocycle are carbazole, acridine, and dibenzoazepine. Thienothiophene are the fusion of two thiophene rings. Phosphaphenalenes are a tricyclic phosphorus-containing heterocyclic system derived from the carbocycle phenalene.

History of heterocyclic chemistry

The history of heterocyclic chemistry began in the 1800s, in step with the development of organic chemistry. Some noteworthy developments: [10]

Uses

Heterocyclic compounds are pervasive in many areas of life sciences and technology. [2] Many drugs are heterocyclic compounds. [11]

See also

Related Research Articles

<span class="mw-page-title-main">Aromatic compound</span> Compound containing rings with delocalized pi electrons

Aromatic compounds or arenes usually refers to organic compounds "with a chemistry typified by benzene" and "cyclically conjugated." The word "aromatic" originates from the past grouping of molecules based on odor, before their general chemical properties were understood. The current definition of aromatic compounds does not have any relation to their odor. Aromatic compounds are now defined as cyclic compounds satisfying Hückel's Rule. Aromatic compounds have the following general properties:

<span class="mw-page-title-main">Pyridine</span> Heterocyclic aromatic organic compound

Pyridine is a basic heterocyclic organic compound with the chemical formula C5H5N. It is structurally related to benzene, with one methine group (=CH−) replaced by a nitrogen atom (=N−). It is a highly flammable, weakly alkaline, water-miscible liquid with a distinctive, unpleasant fish-like smell. Pyridine is colorless, but older or impure samples can appear yellow, due to the formation of extended, unsaturated polymeric chains, which show significant electrical conductivity. The pyridine ring occurs in many important compounds, including agrochemicals, pharmaceuticals, and vitamins. Historically, pyridine was produced from coal tar. As of 2016, it is synthesized on the scale of about 20,000 tons per year worldwide.

Pyrrole is a heterocyclic, aromatic, organic compound, a five-membered ring with the formula C4H4NH. It is a colorless volatile liquid that darkens readily upon exposure to air. Substituted derivatives are also called pyrroles, e.g., N-methylpyrrole, C4H4NCH3. Porphobilinogen, a trisubstituted pyrrole, is the biosynthetic precursor to many natural products such as heme.

Thiophene is a heterocyclic compound with the formula C4H4S. Consisting of a planar five-membered ring, it is aromatic as indicated by its extensive substitution reactions. It is a colorless liquid with a benzene-like odor. In most of its reactions, it resembles benzene. Compounds analogous to thiophene include furan (C4H4O), selenophene (C4H4Se) and pyrrole (C4H4NH), which each vary by the heteroatom in the ring.

Furan is a heterocyclic organic compound, consisting of a five-membered aromatic ring with four carbon atoms and one oxygen atom. Chemical compounds containing such rings are also referred to as furans.

<span class="mw-page-title-main">Imidazole</span> Chemical compound

Imidazole (ImH) is an organic compound with the formula C3N2H4. It is a white or colourless solid that is soluble in water, producing a mildly alkaline solution. In chemistry, it is an aromatic heterocycle, classified as a diazole, and has non-adjacent nitrogen atoms in meta-substitution.

<span class="mw-page-title-main">Benzofuran</span> Heterocyclic compound consisting of fused benzene and furan rings

Benzofuran is the heterocyclic compound consisting of fused benzene and furan rings. This colourless liquid is a component of coal tar. Benzofuran is the structural nucleus of many related compounds with more complex structures. For example, psoralen is a benzofuran derivative that occurs in several plants.

Simple aromatic rings, also known as simple arenes or simple aromatics, are aromatic organic compounds that consist only of a conjugated planar ring system. Many simple aromatic rings have trivial names. They are usually found as substructures of more complex molecules. Typical simple aromatic compounds are benzene, indole, and pyridine.

Thiazole, or 1,3-thiazole, is a 5-membered heterocyclic compound that contains both sulfur and nitrogen. The term 'thiazole' also refers to a large family of derivatives. Thiazole itself is a pale yellow liquid with a pyridine-like odor and the molecular formula C3H3NS. The thiazole ring is notable as a component of the vitamin thiamine (B1).

<span class="mw-page-title-main">Arsole</span> Chemical compound

Arsole, also called arsenole or arsacyclopentadiene, is an organoarsenic compound with the formula C4H4AsH. It is classified as a metallole and is isoelectronic to and related to pyrrole except that an arsenic atom is substituted for the nitrogen atom. Whereas the pyrrole molecule is planar, the arsole molecule is not, and the hydrogen atom bonded to arsenic extends out of the molecular plane. Arsole is only moderately aromatic, with about 40% the aromaticity of pyrrole. Arsole itself has not been reported in pure form, but several substituted analogs called arsoles exist. Arsoles and more complex arsole derivatives have similar structure and chemical properties to those of phosphole derivatives. When arsole is fused to a benzene ring, this molecule is called arsindole, or benzarsole.

Azoles are a class of five-membered heterocyclic compounds containing a nitrogen atom and at least one other non-carbon atom as part of the ring. Their names originate from the Hantzsch–Widman nomenclature. The parent compounds are aromatic and have two double bonds; there are successively reduced analogs with fewer. One, and only one, lone pair of electrons from each heteroatom in the ring is part of the aromatic bonding in an azole. Names of azoles maintain the prefix upon reduction. The numbering of ring atoms in azoles starts with the heteroatom that is not part of a double bond, and then proceeds towards the other heteroatom.

Organosulfur chemistry is the study of the properties and synthesis of organosulfur compounds, which are organic compounds that contain sulfur. They are often associated with foul odors, but many of the sweetest compounds known are organosulfur derivatives, e.g., saccharin. Nature is abound with organosulfur compounds—sulfur is vital for life. Of the 20 common amino acids, two are organosulfur compounds, and the antibiotics penicillin and sulfa drugs both contain sulfur. While sulfur-containing antibiotics save many lives, sulfur mustard is a deadly chemical warfare agent. Fossil fuels, coal, petroleum, and natural gas, which are derived from ancient organisms, necessarily contain organosulfur compounds, the removal of which is a major focus of oil refineries.

<span class="mw-page-title-main">Benzoxazole</span> Chemical compound

Benzoxazole is an aromatic organic compound with a molecular formula C7H5NO, a benzene-fused oxazole ring structure, and an odor similar to pyridine. Although benzoxazole itself is of little practical value, many derivatives of benzoxazoles are commercially important.

<span class="mw-page-title-main">Cyclic compound</span> Molecule with a ring of bonded atoms

A cyclic compound is a term for a compound in the field of chemistry in which one or more series of atoms in the compound is connected to form a ring. Rings may vary in size from three to many atoms, and include examples where all the atoms are carbon, none of the atoms are carbon, or where both carbon and non-carbon atoms are present. Depending on the ring size, the bond order of the individual links between ring atoms, and their arrangements within the rings, carbocyclic and heterocyclic compounds may be aromatic or non-aromatic; in the latter case, they may vary from being fully saturated to having varying numbers of multiple bonds between the ring atoms. Because of the tremendous diversity allowed, in combination, by the valences of common atoms and their ability to form rings, the number of possible cyclic structures, even of small size numbers in the many billions.

In organic chemistry, the Paal–Knorr synthesis is a reaction used to synthesize substituted furans, pyrroles, or thiophenes from 1,4-diketones. It is a synthetically valuable method for obtaining substituted furans and pyrroles, which are common structural components of many natural products. It was initially reported independently by German chemists Carl Paal and Ludwig Knorr in 1884 as a method for the preparation of furans, and has been adapted for pyrroles and thiophenes. Although the Paal–Knorr synthesis has seen widespread use, the mechanism wasn't fully understood until it was elucidated by V. Amarnath et al. in the 1990s.

<span class="mw-page-title-main">Heterocyclic amine</span> Any heterocyclic compound having at least one nitrogen heteroatom

Heterocyclic amines, also sometimes referred to as HCAs, are chemical compounds containing at least one heterocyclic ring, which by definition has atoms of at least two different elements, as well as at least one amine (nitrogen-containing) group. Typically it is a nitrogen atom of an amine group that also makes the ring heterocyclic, though compounds exist in which this is not the case. The biological functions of heterocyclic amines vary, including vitamins and carcinogens. Carcinogenic heterocyclic amines are created by high temperature cooking of meat and smoking of plant matter like tobacco. Some well known heterocyclic amines are niacin, nicotine, and the nucleobases that encode genetic information in DNA.

In organic chemistry, Hantzsch–Widman nomenclature, also called the extended Hantzsch–Widman system, is a type of systematic chemical nomenclature used for naming heterocyclic parent hydrides having no more than ten ring members. Some common heterocyclic compounds have retained names that do not follow the Hantzsch–Widman pattern.

A ring forming reaction or ring-closing reaction in organic chemistry is an umbrella term for a variety of reactions that introduce one or more rings into a molecule. A heterocycle forming reaction is a reaction that introduces a new heterocycle. Important classes of ring forming reactions include annulations and cycloadditions. Heterocyclic compounds are useful in spectroscopic identification of compounds, purity criteria, and investigating the molecular electronic structures.

<span class="mw-page-title-main">Telluropyrylium</span> Chemical compound

Telluropyrylium is an aromatic heterocyclic compound consisting of a six member ring with five carbon atoms, and a positively charged tellurium atom. Derivatives of telluropyrylium are important in research of infrared dyes.

<span class="mw-page-title-main">Selenophene</span> Chemical compound

Selenophene is an organic compound with the chemical formula C4H4Se. It is an unsaturated compound containing a five-member ring with four carbon atoms and one selenium atom. It is a selenium analog of furan C4H4O and thiophene C4H4S. A colorless liquid, it is one of the more common selenium heterocycles.

References

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  4. Edon Vitaku, David T. Smith, Jon T. Njardarson (2014). "Analysis of the Structural Diversity, Substitution Patterns, and Frequency of Nitrogen Heterocycles among U.S. FDA Approved Pharmaceuticals". J. Med. Chem. 57 (24): 10257–10274. doi:10.1021/jm501100b. PMID   25255204.{{cite journal}}: CS1 maint: multiple names: authors list (link)
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  8. "Bismin". ChemSpider. Royal Society of Chemistry. Retrieved 11 June 2018.
  9. "Selenopyranium". ChemSpider. Royal Society of Chemistry. Retrieved 11 June 2018.
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