Patulibacter

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Patulibacter
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Domain: Bacteria
Phylum: Actinomycetota
Class: Thermoleophilia
Order: Solirubrobacterales
Family: Patulibacteraceae
Takahashi et al. 2006 [1]
Genus: Patulibacter
Takahashi et al. 2006 [1]
Type species
Patulibacter minatonensis
Takahashi et al. 2006
Species [2]

Patulibacter is a genus of bacteria from the family Patulibacteraceae. [2] [3] [4]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [2] and National Center for Biotechnology Information (NCBI). [5]

16S rRNA based LTP_08_2023 [6] [7] [8] 120 marker proteins based GTDB 08-RS214 [9] [10] [11]
Patulibacter

P. medicamentivorans Almeida et al. 2013

P. brassicae Jin et al. 2016

P. ginsengiterrae Kim et al. 2012

P. americanus Reddy and Garcia-Pichel 2009

P. minatonensis Takahashi et al. 2006

Related Research Articles

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Halobacteriales are an order of the Halobacteria, found in water saturated or nearly saturated with salt. They are also called halophiles, though this name is also used for other organisms which live in somewhat less concentrated salt water. They are common in most environments where large amounts of salt, moisture, and organic material are available. Large blooms appear reddish, from the pigment bacteriorhodopsin. This pigment is used to absorb light, which provides energy to create ATP. Halobacteria also possess a second pigment, halorhodopsin, which pumps in chloride ions in response to photons, creating a voltage gradient and assisting in the production of energy from light. The process is unrelated to other forms of photosynthesis involving electron transport; however, and halobacteria are incapable of fixing carbon from carbon dioxide.

<span class="mw-page-title-main">Campylobacterota</span> Class of bacteria

Campylobacterota are a phylum of Gram-negative bacteria. Only a few genera have been characterized, including the curved to spirilloid Wolinella, Helicobacter, and Campylobacter. Until the 2021 revision of bacterial taxonomy by the ICSP, the entire phylum was classified within the Proteobacteria as the Epsilonproteobacteria.

Halopiger is a genus of archaeans in the family Natrialbaceae that have high tolerance to salinity.

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The Veillonellaceae are a family of the Clostridia, formerly known as Acidaminococcaceae. Bacteria in this family are grouped together mainly based on genetic studies, which place them among the Bacillota. Supporting this placement, several species are capable of forming endospores. However, they differ from most other Bacillota in having Gram-negative stains. The cell wall composition is peculiar.

Actinocatenispora is a genus in the phylum Actinomycetota (Bacteria).

The Solirubrobacterales are an order of Actinomycetota.

The Selenomonadales are an order of bacteria within the class Negativicutes; unlike most other members of Bacillota, they are Gram-negative. The phylogeny of this order was initially determined by 16S rRNA comparisons. More recently, molecular markers in the form of conserved signature indels (CSIs) have been found specific for all Selenomonadales species. On the basis of these markers, the Selenomonadales are inclusive of two distinct families, and are no longer the sole order within the Negativicutes. Several CSIs have also been found specific for both families, Sporomusaceae and Selenomonadceae. Samples of bacterial strains within this order have been isolated from the root canals of healthy human teeth.

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Kroppenstedtia is a bacterial genus from the family of Thermoactinomycetaceae.

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<span class="mw-page-title-main">Haloferacaceae</span> Family of bacteria

Haloferacaceae is a family of halophilic, chemoorganotrophic or heterotrophic archaea within the order Haloferacales. The type genus of this family is Haloferax. Its biochemical characteristics are the same as the order Haloferacales.

Conexibacter is a Gram-positive, non-spore-forming and aerobic genus of bacteria from the family Conexibacteraceae.

Patulibacter minatonensis is a Gram-positive bacterium from the genus Patulibacter which has been isolated from soil in Japan.

Sphaerisporangium is a Gram-positive genus of bacteria from the family of Streptosporangiaceae.

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Natrialbales is an order of halophilic, chemoorganotrophic archaea within the class Haloarchaea. The type genus of this order is Natrialba.

Haloferacales is an order of halophilic, chemoorganotrophic or heterotrophic archaea within the class Haloarchaea. The type genus of this order is Haloferax.

References

  1. 1 2 Takahashi Y, Matsumoto A, Morisaki K, Omura S (2006). "Patulibacter minatonensis gen. nov., sp. nov., a novel actinobacterium isolated using an agar medium supplemented with superoxide dismutase, and proposal of Patulibacteraceae fam. nov". Int J Syst Evol Microbiol. 56 (Pt 2): 401–406. doi: 10.1099/ijs.0.63796-0 . PMID   16449447.
  2. 1 2 3 Euzéby JP, Parte AC. "Patulibacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 23, 2021.
  3. "Patulibacter". www.uniprot.org.
  4. Parker, Charles Thomas; Wigley, Sarah; Garrity, George M (2009). Parker, Charles Thomas; Garrity, George M (eds.). "Nomenclature Abstract for Patulibacter Takahashi et al. 2006 emend. Kim et al. 2012". The NamesforLife Abstracts. doi:10.1601/nm.9873 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
  5. Sayers; et al. "Patulibacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
  6. "The LTP" . Retrieved 20 November 2023.
  7. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  8. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  9. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  11. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.

Further reading