Prosthecobacter

Last updated

Prosthecobacter
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Verrucomicrobiota
Class: Verrucomicrobiae
Order: Verrucomicrobiales
Family: Verrucomicrobiaceae
Genus: Prosthecobacter
Staley et al. 1976 ex Staley et al. 1980 [1]
Type species
Prosthecobacter fusiformis
Staley et al. 1976 ex Staley et al. 1980
Species
Synonyms

Prosthecobacter is a genus of bacteria from the phylum Verrucomicrobiota with a distinctive characteristic; the presence of tubulin-like genes. Tubulins, which are components of the microtubule, have never been observed in Gracilicutes before.

Contents

Tubulin was long thought to be specific to eukaryotes. More recently, however, several prokaryotic proteins have been shown to be related to tubulin. [2] [3] [4] [5]

Most bacteria have a homologous structure, FtsZ. Prosthecobacter are the exception to this, containing genes that have higher sequence homology to eukaryotic tubulin than FtsZ.

These genes are called bacterial tubulin a (BtubA) and bacterial tubulin b (BtubB). The properties are not exactly same. However, surface loops and microtubules are extremely similar.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [6]

16S rRNA based LTP_10_2024 [7] [8] [9] 120 marker proteins based GTDB 09-RS220 [10] [11] [12]
Prosthecobacter

P. fluviatilis Takeda et al. 2008

P. vanneerveniiHedlund et al. 1998

Brevifollis gellanilyticus Otsuka et al. 2013

P. debontiiHedlund et al. 1998

P. dejongeiiHedlund et al. 1998

P. algae Lee et al. 2014

P. fusiformisStaley et al. 1976 ex Staley et al. 1980

Prosthecobacter

P. vanneervenii

Brevifollis gellanilyticus

P. debontii

P. dejongeii

P. fusiformis

See also

Related Research Articles

<span class="mw-page-title-main">Tubulin</span> Superfamily of proteins that make up microtubules

Tubulin in molecular biology can refer either to the tubulin protein superfamily of globular proteins, or one of the member proteins of that superfamily. α- and β-tubulins polymerize into microtubules, a major component of the eukaryotic cytoskeleton. It was discovered and named by Hideo Mōri in 1968. Microtubules function in many essential cellular processes, including mitosis. Tubulin-binding drugs kill cancerous cells by inhibiting microtubule dynamics, which are required for DNA segregation and therefore cell division.

<i>Treponema</i> Genus of bacteria

Treponema is a genus of spiral-shaped bacteria. The major treponeme species of human pathogens is Treponema pallidum, whose subspecies are responsible for diseases such as syphilis, bejel, and yaws. Treponema carateum is the cause of pinta. Treponema paraluiscuniculi is associated with syphilis in rabbits. Treponema succinifaciens has been found in the gut microbiome of traditional rural human populations.

<span class="mw-page-title-main">Spirochaetales</span> Order of bacteria

The Spirochaetales are an order of spirochete bacteria. Some species within this order are known to causes syphilis, Lyme disease, relapsing fever, and other illnesses.

<span class="mw-page-title-main">Leptospiraceae</span> Family of bacteria

The Leptospiraceae are a family of spirochete bacteria. It includes the genus Leptospira which contains some pathogenic species.

<span class="mw-page-title-main">Streptomycetaceae</span> Family of bacteria

Streptomycetaceae is a family of the class Actinomycetota, making up the monotypic order Streptomycetales. It includes the important genus Streptomyces. This was the original source of many antibiotics, namely streptomycin, the first antibiotic against tuberculosis.

<span class="mw-page-title-main">Campylobacterota</span> Phylum of bacteria

Campylobacterota are a phylum of Gram-negative bacteria. Until the 2021 revision of bacterial taxonomy by the ICSP, the entire phylum was classified within the Proteobacteria as the Epsilonproteobacteria and the Desulfurellales. The separation of this phylum from "Proteobacteria" was originally proposed in 2017, using GTDB-based methods.

<span class="mw-page-title-main">Methanomicrobia</span> Class of archaea

In the taxonomy of microorganisms, the Methanomicrobia are a class of the Euryarchaeota.

Thermoproteales are an order of archaeans in the class Thermoprotei. They are the only organisms known to lack the SSB proteins, instead possessing the protein ThermoDBP that has displaced them. The rRNA genes of these organisms contain multiple introns, which can be homing endonuclease encoding genes, and their presence can impact the binding of "universal" 16S rRNA primers often used in environmental sequencing surveys.

The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbouring Clostridia species also stain gram-negative, the proteins responsible for the unusual diderm structure of the Negativicutes may have actually been laterally acquired from Pseudomonadota. Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes.

The Cryptosporangiaceae are the only family of the order Cryptosporangiales, which is a part of the phylum Actinomycetota.

<span class="mw-page-title-main">Syntrophomonadaceae</span> Family of bacteria

The Syntrophomonadaceae are a family of anaerobic bacteria in the order of Clostridiales. As a source of energy, these organisms use carboxylic acids.

<i>Cutibacterium</i> Genus of bacteria

Cutibacterium is a bacterial genus from the family of Propionibacteriaceae.

Phycisphaeraceae is a family of bacteria.

The Propionibacteriales are an order of bacteria.

<span class="mw-page-title-main">Micrococcales</span> Family of bacteria

The Micrococcales are an order of bacteria in the phylum Actinomycetota.

The Actinopolymorphaceae are a family of bacteria.

The Rhodothermales are an order of bacteria.

Isosphaeraceae is a family of bacteria.

The Pirellulaceae are a family of bacteria.

Geodermatophilus is a Gram-positive genus of bacteria from the phylum Actinomycetota.

References

  1. 1 2 J.P. Euzéby. "Prosthecobacter". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  2. Nogales E, Downing KH, Amos LA, Löwe J (June 1998). "Tubulin and FtsZ form a distinct family of GTPases". Nature Structural Biology. 5 (6): 451–8. doi:10.1038/nsb0698-451. PMID   9628483. S2CID   5945125.
  3. Jenkins C, Samudrala R, Anderson I, Hedlund BP, Petroni G, Michailova N, Pinel N, Overbeek R, Rosati G, Staley JT (December 2002). "Genes for the cytoskeletal protein tubulin in the bacterial genus Prosthecobacter". Proceedings of the National Academy of Sciences of the United States of America. 99 (26): 17049–54. Bibcode:2002PNAS...9917049J. doi: 10.1073/pnas.012516899 . PMC   139267 . PMID   12486237.
  4. Yutin N, Koonin EV (March 2012). "Archaeal origin of tubulin". Biology Direct. 7: 10. doi: 10.1186/1745-6150-7-10 . PMC   3349469 . PMID   22458654.
  5. Larsen RA, Cusumano C, Fujioka A, Lim-Fong G, Patterson P, Pogliano J (June 2007). "Treadmilling of a prokaryotic tubulin-like protein, TubZ, required for plasmid stability in Bacillus thuringiensis". Genes & Development. 21 (11): 1340–52. doi:10.1101/gad.1546107. PMC   1877747 . PMID   17510284.
  6. Sayers; et al. "Prosthecobacter". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  7. "The LTP" . Retrieved 10 December 2024.
  8. "LTP_all tree in newick format" . Retrieved 10 December 2024.
  9. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  10. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
  11. "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
  12. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.