Exiguobacterium | |
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Scientific classification | |
Domain: | Bacteria |
Phylum: | Bacillota |
Class: | Bacilli |
Order: | Bacillales |
Family: | Bacillaceae |
Genus: | Exiguobacterium Collins et al. 1983 [1] |
Type species | |
Exiguobacterium aurantiacum Collins et al. 1984 | |
Species | |
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Exiguobacterium is a genus of bacilli and a member of the low GC phyla of Bacillota. Collins et al. first described the genus Exiguobacterium with the characterization of E. aurantiacum strain DSM6208T from an alkaline potato processing plant. [2] It has been found in areas covering a wide range of temperatures (-12 °C—55 °C) including glaciers in Greenland and hot springs in Yellowstone, and has been isolated from ancient permafrost in Siberia. [3] This ability to survive in varying temperature extremes makes them an important area of study. Some strains in addition to dynamic thermal adaption are also halotolerant (up to 13% added NaCl added to the medium), can grow within a wide range of pH values (5-11), tolerate high levels of UV radiation, and heavy metal stress (including arsenic). [4]
Exiguobacterium are globally diverse organisms that are found in a variety of environments including microbialites (Thrombolite [5] from Pavilion Lake, BC and Stromatolites [6] from Laguna Socompa, Argentina), ocean, [7] freshwater lakes, [8] Himalayan ice, [9] Himalayan soil, [10] hydrothermal vents, [11] brine shrimp, [12] gastrointestinal tract of marine fish [13] and in microbial biofilms [14]
Seven genomes from the genus have been completed as either complete (one circular chromosome, with plasmids) or in a draft format (containing multiple unassembled contigs). A new species of Exiguobacterium chiriqhucha has been found to have global distribution in cold lakes from Greenland, Pavilion Lake BC, and Laguna Negra, Argentina. [15] The 'Chiri qhucha' in Quechua means 'cold lake.' The study of Gutiérrez-Preciado et al. was confirmed by the completion of genomes two strains of Exiguobacterium chiriqhucha RW2 and GIC31. [16] Phospholipid fatty acid analysis (PLFA) of varying temperatures in Exiguobacterium chiriqhucha strain RW2 results in major rearrangements of cellular membrane function which may allow for its temperature, pH and salinity adaptation. [17]
According to an article in the Stanford News Service, [18] senior research engineer Wei-Min Wu reported in his article "Biodegradation and Mineralization of Polystyrene by Plastic-Eating Mealworms. 2. Role of Gut Microorganisms." [19] that mealworms can survive on a diet of polystyrene when aided by strain YT2 of Exiguobacterium living in their gut.
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [20]
16S rRNA based LTP_01_2022 [21] [22] [23] | 120 marker proteins based GTDB 07-RS207 [24] [25] [26] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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The Hyphomicrobiaceae are a family of bacteria. Among others, they include Rhodomicrobium, a genus of purple bacteria.
The Thermodesulfobacteriota are a phylum of thermophilic sulfate-reducing bacteria.
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Thermoproteales are an order of archaeans in the class Thermoprotei. They are the only organisms known to lack the SSB proteins, instead possessing the protein ThermoDBP that has displaced them. The rRNA genes of these organisms contain multiple introns, which can be homing endonuclease encoding genes, and their presence can impact the binding of "universal" 16S rRNA primers often used in environmental sequencing surveys.
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Halopiger is a genus of archaeans in the family Natrialbaceae that have high tolerance to salinity.
Halorubrum is a genus in the family Halorubraceae. Halorubrum species are usually halophilic and can be found in waters with high salt concentration such as the Dead Sea or Lake Zabuye.
In taxonomy, Halosimplex is a genus of the Halobacteriaceae.
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Natronorubrum is a genus in the family Halobacteriaceae.
Agrococcus is a genus in the phylum Actinomycetota (Bacteria).
Polynucleobacter is a genus of bacteria, originally established by Heckmann and Schmidt (1987) to exclusively harbor obligate endosymbionts of ciliates belonging to the genus Euplotes.
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The Coriobacteriia are a class of Gram-positive bacteria within the Actinomycetota phylum. Species within this group are nonsporulating, strict or facultative anaerobes that are capable of thriving in a diverse set of ecological niches. Gordonibacter species are the only members capable of motility by means of flagella within the class. Several species within the Coriobacteriia class have been implicated with human diseases that range in severity. Atopobium, Olsenella, and Cryptobacterium species have responsible for human oral infections including periodontitis, halitosis, and other endodontic infections. Eggerthella species have been associated with severe blood bacteraemia and ulcerative colitis.
Rhodoluna is a Gram-positive, non-spore-forming and non-motile genus of bacteria from the family of Microbacteriaceae. The type strain of the only species Rhodoluna lacicola encodes an actinorhodopsin, which is a light-diven proton pump enabling light energy conversion, potentially resulting in a mixotrophic physiology. The type strain of R. lacicola was isolated from Lake Tai in China. The type strain MWH-Ta8 is remarkable for its very small cell size ultramicrobacterium and its small genome size of only 1.4 Mbp. The type strain has a planktonic lifestyle, that is freely floating the water column of aquatic systems. Currently, the genus Rhodoluna contains two described species.
Amorphaceae is a family of Alphaproteobacteria.
Exiguobacterium chiriqhucha is a bacterium from the genus of Exiguobacterium.
Holophagae is a class of Acidobacteriota.