Lactobacillaceae

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Lactobacillaceae
Lactobacillus sp 01.png
Lactobacillus near a squamous epithelial cell
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Bacillota
Class: Bacilli
Order: Lactobacillales
Family: Lactobacillaceae
Winslow et al. 1917 (Approved Lists 1980)
Type genus
Lactobacillus
Beijerinck 1901 (Approved Lists 1980)
Synonyms [1]
  • "Acidobacteriaceae" Orla-Jesen 1909 non Thrash & Coates 2012
  • Leuconostocaceae Schleifer 2010

The Lactobacillaceae are a family of lactic acid bacteria. [2] It is the only family in the lactic acid bacteria which includes homofermentative and heterofermentative organisms; [3] in the Lactobacillaceae, the pathway used for hexose fermentation is a genus-specific trait. Lactobacillaceae include the homofermentative lactobacilli Lactobacillus, Holzapfelia, Amylolactobacillus, Bombilactobacillus, Companilactobacillus, Lapidilactobacillus, Agrilactobacillus, Schleiferilactobacillus, Loigolactobacillus, Lacticaseibacillus, Latilactobacillus, Dellaglioa, Liquorilactobacillus, Ligilactobacillus, and Lactiplantibacillus; the heterofermentative lactobacilli Furfurilactobacillus, Paucilactobacillus, Limosilactobacillus, Fructilactobacillus, Acetilactobacillus, Apilactobacillus, Levilactobacillus, Secundilactobacillus, and Lentilactobacillus, which were previously classified in the genus Lactobacillus ; and the heterofermentative genera Convivina, Fructobacillus, Leuconostoc, Oenococcus, and Weissella which were previously classified in the Leuconostocaceae. [1]

Contents

The Lactobacillaceae are also the only family of the lactic acid bacteria which does not include pathogenic or opportunistic pathogenic organisms although some species, particularly Lacticaseibacillus rhamnosus and Weissella spp. can cause rare infections in critically ill patients. [4] [5]

With the exception of Lactococcus lactis, Streptococcus thermophilus and Tetragenococcus halophilus, most food fermenting lactic acid bacteria are now classified in the Lactobacillaceae. [1] [6] [7]

The grandfathered term lactobacilli refers to all bacteria classified in Lactobacillaceae prior to 2020, i.e. Lactobacillus sensu lato (pre-split), Pediococcus , and Sharpea . [1] Some authors use lactobacilli to refer to Lactobacillussensu lato only.

Leuconostocaceae

At one point five genera (Convivina, Fructobacillus, Leuconostoc, Oenococcus and Weissella) were considered a separate family called Leuconostocaceae. [8] These three genera are non-spore-forming, round or elongated in shape, and anaerobic or aerotolerant. They usually inhabit nutrient-rich environments such as milk, meat, vegetable products, and fermented drinks. [9] [10] Lactic acid is the main end product of their characteristic heterofermentative carbohydrate metabolism. In 2020 Leuconostocaceae was synonymized with Lactobacillaceae. [1]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [11] and National Center for Biotechnology Information (NCBI). [12]


Zheng et al. 2020 [1] 16S rRNA based LTP_10_2024 [13] [14] [15] 120 marker proteins based GTDB 09-RS220 [16] [17] [18]
Lactobacillaceae
Lactobacillaceae

Loigolactobacillus Zheng et al. 2020

Paralactobacillus Leisner et al. 2000

Latilactobacillus Zheng et al. 2020

Lacticaseibacillus Zheng et al. 2020

Schleiferilactobacillus Zheng et al. 2020

Agrilactobacillus Zheng et al. 2020

Lapidilactobacillus Zheng et al. 2020

Bombilactobacillus Zheng et al. 2020

Companilactobacillus Zheng et al. 2020

Holzapfelia Deshmukh & Oren 2023

Amylolactobacillus Zheng et al. 2020

Lactobacillus Beijerinck 1901

Dellaglioa Zheng et al. 2020

Liquorilactobacillus Zheng et al. 2020

Ligilactobacillus Zheng et al. 2020

Limosilactobacillus Zheng et al. 2020

Paucilactobacillus Zheng et al. 2020

"Ca. Gallilactobacillus" Gilroy et al. 2021

Furfurilactobacillus Zheng et al. 2020

Periweissella Bello, Rudra & Gupta 2022

Leuconostocaceae

Weissella Collins et al. 1994

Oenococcus Dicks, Dellaglio & Collins 1995

Convivina Praet et al. 2015

Fructobacillus Endo & Okada 2008

Leuconostoc van Tieghem 1878

Pediococcus Balcke 1884 ex Claussen 1903

Lactiplantibacillus Zheng et al. 2020

Fructilactobacillus Zheng et al. 2020

Nicoliella Deshmukh & Oren 2023

Philodulcilactobacillus Kouya et al. 2023

Acetilactobacillus Zheng et al. 2020

Apilactobacillus Zheng et al. 2020

Lentilactobacillus Zheng et al. 2020

Secundilactobacillus Zheng et al. 2020

Levilactobacillus Zheng et al. 2020

Unassigned genus:

See also

References

  1. 1 2 3 4 5 6
  2. "Lactobacillaceae - Definition and More from Merriam-Webster's Free Medical Dictionary". Merriam-Webster Online. Retrieved 26 July 2010.
  3. Gänzle, Michael G (2015). "Lactic metabolism revisited: metabolism of lactic acid bacteria in food fermentations and food spoilage". Current Opinion in Food Science. Food Microbiology • Functional Foods and Nutrition. 2: 106–117. doi:10.1016/j.cofs.2015.03.001. ISSN   2214-7993.
  4. Ricci, Antonia; Allende, Ana; Bolton, Declan; Chemaly, Marianne; Davies, Robert; Girones, Rosina; Herman, Lieve; Koutsoumanis, Konstantinos; Lindqvist, Roland; Nørrung, Birgit; Robertson, Lucy (2017). "Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA". EFSA Journal. 15 (3): e04664. doi:10.2903/j.efsa.2017.4664. ISSN   1831-4732. PMC   7010101 . PMID   32625421.
  5. Abriouel, Hikmate; Lerma, Leyre Lavilla; Casado Muñoz, María del Carmen; Montoro, Beatriz Pérez; Kabisch, Jan; Pichner, Rohtraud; Cho, Gyu-Sung; Neve, Horst; Fusco, Vincenzina; Franz, Charles M. A. P.; Gálvez, Antonio (2015). "The controversial nature of the Weissella genus: Technological and functional aspects versus whole genome analysis-based pathogenic potential for their application in food and health". Frontiers in Microbiology. 6: 1197. doi: 10.3389/fmicb.2015.01197 . ISSN   1664-302X. PMC   4621295 . PMID   26579103.
  6. Gänzle, Michael (2019), "Fermented Foods", Food Microbiology, John Wiley & Sons, Ltd, pp. 855–900, doi:10.1128/9781555819972.ch33, ISBN   978-1-68367-047-6, S2CID   242940113 , retrieved 2020-11-28
  7. Hutkins, Robert W., ed. (2018). Microbiology and Technology of Fermented Foods (2nd ed.). doi:10.1002/9780470277515. ISBN   9780470277515.
  8. Chelo, Ivo M.; Zé-Zé, Líbia; Tenreiro, Rogério (2007). "Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK". International Journal of Systematic and Evolutionary Microbiology. 57 (2): 276–86. doi: 10.1099/ijs.0.64468-0 . PMID   17267964.
  9. Björkroth, Johanna; Holzapfel, Wilhelm (2006). "Genera Leuconostoc, Oenococcus and Weissella". The Prokaryotes. pp. 267–319. doi:10.1007/0-387-30744-3_9. ISBN   978-0-387-25494-4.
  10. Mohammad, Salma Malihah; Mahmud-Ab-Rashid, Nor-Khaizura; Zawawi, Norhasnida (2020-08-25). "Probiotic properties of bacteria isolated from bee bread of stingless bee Heterotrigona itama" (PDF). Journal of Apicultural Research. 60: 172–187. doi:10.1080/00218839.2020.1801152. ISSN   0021-8839. S2CID   225208290.
  11. J.P. Euzéby. "Lactobacillaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
  12. Sayers; et al. "Lactobacillaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
  13. "The LTP" . Retrieved 10 December 2024.
  14. "LTP_all tree in newick format" . Retrieved 10 December 2024.
  15. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  16. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
  17. "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
  18. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.