Nocardiopsis

Nocardiopsis
Scientific classification
Domain:	Bacteria
Kingdom:	Bacillati
Phylum:	Actinomycetota
Class:	Actinomycetia
Order:	Streptosporangiales
Family:	Nocardiopsaceae
Genus:	Nocardiopsis (Brocq-Rousseau 1904) Meyer 1976 [1]
Type species
Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976
Species [2]
See text
Synonyms [3]
"Brachystreptospora"

Nocardiopsis is a bacterial genus from the family Nocardiopsaceae which can produces some antimicrobial compounds, ^{[1] [3] [4]} including thiopeptides. ^[5] Nocardiopsis occur mostly in saline and alkaline soils. ^[6]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) ^[1] and National Center for Biotechnology Information (NCBI). ^[2]

16S rRNA based LTP_10_2024 [7] [8] [9]

120 marker proteins based GTDB 09-RS220 [10] [11] [12]

Nocardiopsis trehalosi Dolak, Castle & Laborde 1981 ex Evtushenko et al. 2000 Nocardiopsis~ Nocardiopsis mangrovicorrig. Huang et al. 2024 Nocardiopsis sediminisMuangham et al. 2016 Nocardiopsis coralliicola Li et al. 2012 Nocardiopsis halophila Al-Tai & Ruan 1994 Nocardiopsis chromatogenes Li et al. 2006 Nocardiopsis endophyticaChantavorakit et al. 2023 Nocardiopsis suaedaeChantavorakit et al. 2023 Nocardiopsis composta corrig. Kämpfer, Busse & Rainey 2002 Nocardiopsis potens Yassin et al. 2009 Nocardiopsis akesuensisGao et al. 2016 Nocardiopsis mwathaeAkhwale et al. 2016 Nocardiopsis gilva Li et al. 2006 Nocardiopsis rhodophaea Li et al. 2006 Nocardiopsis rosea Li et al. 2006 Nocardiopsis N. ansamitocini Zhang et al. 2016 N. nikkonensis Yamamura et al. 2010 N. rhizosphaeraeZhang et al. 2016 N. salina Li et al. 2004 N. coralliLi et al. 2021 N. xinjiangensis Li et al. 2003 N. kunsanensis Chun et al. 2000 N. litoralis Chen et al. 2009 N. fildesensis Xu et al. 2014 N. flavescens Fang et al. 2011 N. lucentensisYassin et al. 1993 N. algeriensis Bouras et al. 2015 N. alba Grund & Kroppenstedt 1990 N. quinghaiensis Chen et al. 2008 N. arvandica Hamedi et al. 2011 N. sinuspersici Hamedi et al. 2010 N. halotolerans Al-Zarban et al. 2002 N. akebiaeMo et al. 2024 N. dassonvillei(Brocq-Rousseau 1904) Meyer 1976 N. desertiAsem et al. 2020 N. dassonvillei crassaminisCamacho Pozo et al. 2020 N. synnemataformansYassin et al. 1997 N. aegyptia Sabry et al. 2004 N. tropica Evtushenko et al. 2000 N. umidischolae Peltola et al. 2002 N. alkaliphila Hozzein et al. 2004 N. changdeensisMo et al. 2024 N. eucommiaeMo et al. 2022 N. prasina(Miyashita, Mikami & Arai 1984) Yassin et al. 1997 N. terrae Chen et al. 2012 N. listeri Grund & Kroppenstedt 1990 N. nanhaiensis Pan et al. 2015 N. oceani Pan et al. 2015 N. ganjiahuensis Zhang et al. 2008 N. metallicus Schippers et al. 2002 N. exhalans Peltola et al. 2002 N. valliformis Yang et al. 2008

Nocardiopsis trehalosi Nocardiopsis ansamitocini Nocardiopsis_C Nocardiopsis gilva Nocardiopsis mwathae Nocardiopsis_A Nocardiopsis composta Nocardiopsis potens Nocardiopsis halophila [ Nocardiopsis baichengensis Li et al. 2006] Nocardiopsis suaedae Nocardiopsis chromatogenes Nocardiopsis endophytica Nocardiopsis "Ca. N. merdipullorum" Gilroy et al. 2021 N. coralli N. salina N. kunsanensis [ N. litoralis ] N. xinjiangensis N. alba N. alkaliphila N. listeri N. terrae N. eucommiae N. prasina N. ganjiahuensis N. exhalans N. metallicus N. aegyptia N. lucentensis N. algeriensis N. changdeensis N. flavescens N. quinghaiensis N. sinuspersici [ N. arvandica ] N. halotolerans Glycomyces fuscusHan et al. 2014 N. dassonvillei [N. deserti] N. alborubidacorrig. Grund & Kroppenstedt 1990 N. synnemataformans

Unassigned species:

• "N. benisuefensis" Hozzein 2003c
• "N. lambiniae" Nouioui et al. 2024
• "N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
• "N. tangguensis" Lu et al. 2002
• "N. viridoflava" Xie, Liu & Wang 2002b
• " N. yanglingensis " Yan et al. 2011

See also

• List of bacterial orders
• List of bacteria genera

References

1. A.C. Parte; et al. "Nocardiopsis". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2025-02-28.
2. C.L. Schoch; et al. "Nocardiopsis". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
3. "Nocardiopsis". uniprot.org. Retrieved 2016-08-18.
4. Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID   26369300. S2CID   5266243.
5. Engelhardt, K.; Degnes, K. F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T. E.; Zotchev, S. B. (18 June 2010). "Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species". Applied and Environmental Microbiology. 76 (15): 4969–4976. Bibcode:2010ApEnM..76.4969E. doi:10.1128/AEM.00741-10. PMC   2916467 . PMID   20562278.
6. (ed.), Koki Horikoshi (2011). Extremophiles handbook. Tokyo: Springer. ISBN   978-4-431-53897-4.{{cite book}}: |last1= has generic name (help)
7. "The LTP" . Retrieved 10 December 2024.
8. "LTP_all tree in newick format" . Retrieved 10 December 2024.
9. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
10. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
11. "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
12. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.

Further reading

• Li, Hong-Wei; Zhi, Xiao-Yang; Yao, Ji-Cheng; Zhou, Yu; Tang, Shu-Kun; Klenk, Hans-Peter; Zhao, Jiao; Li, Wen-Jun; Brochier-Armanet, Celine (23 April 2013). "Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability". PLOS ONE. 8 (4): e61528. Bibcode:2013PLoSO...861528L. doi: 10.1371/journal.pone.0061528 . PMC   3634020 . PMID   23626695.
• Zhang, Haibo; Saurav, Kumar; Yu, Ziquan; Mándi, Attila; Kurtán, Tibor; Li, Jie; Tian, Xinpeng; Zhang, Qingbo; Zhang, Wenjun; Zhang, Changsheng (24 June 2016). "α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains". Journal of Natural Products. 79 (6): 1610–1618. doi:10.1021/acs.jnatprod.6b00175. PMID   27300427.
• Pan, HQ; Zhang, DF; Li, L; Jiang, Z; Cheng, J; Zhang, YG; Wang, HF; Hu, JC; Li, WJ (October 2015). "Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea". International Journal of Systematic and Evolutionary Microbiology. 65 (10): 3384–91. doi: 10.1099/ijsem.0.000425 . PMID   26297579.
• Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID   26369300. S2CID   5266243.
• Patrice, Dion; Chandra Shekhar, Nautiyal (2007). Microbiology of Extreme Soils. Springer Science & Business Media. ISBN   978-3-540-74231-9.
• Horikoshi, Koki (1999). Alkaliphiles. Tokyo: Kodansha. ISBN   90-5702-458-6.
• Atta-ur-Rahman, edited by (1997). Studies in Natural Products Chemistry Indices Part A. Burlington: Elsevier. ISBN   0-08-048120-5.{{cite book}}: |first1= has generic name (help)
• Glasby, John S. (1992). Dictionary of antibiotic-producing organisms (1. publ. ed.). New York: Ellis Horwood. ISBN   0-13-210584-5.
• Staley, Don J. Brenner ... ed. Ed. board James T. (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN   0-387-28021-9.