Peptostreptococcaceae

Peptostreptococcaceae
Scientific classification
Domain:	Bacteria
Phylum:	Bacillota
Class:	Clostridia
Order:	Peptostreptococcales
Family:	Peptostreptococcaceae Ezaki 2010 [1]
Genera
See text
Synonyms
Filifactoraceae Chuvochina et al. 2024 Peptoclostridiaceae Bello et al. 2024

The Peptostreptococcaceae are a family of Gram-positive anaerobic bacteria in the class Clostridia. A majority of members are identified as obligate anaerobes. The bacteria can be found in humans, vertebrates, manure, soil and hydrothermal vents. Peptostreptococcaceae metabolize via fermentation producing a variety of short-chain fatty acids. ^[2] The bacteria are important in the digestion process of many ruminants, and in the oral health of vertebrates. Shape of the bacteria varies from cocci, rods or filaments, among species. Most strains fall within the size of 0.6-0.9 μm. ^[2]

Taxonomy

Origin of nomenclature is derived from the Greek "peptos", meaning digested, and Streptococcus, a bacterial genus name combine to form Peptostreptococcus—the "digesting streptococcus". ^[2]

The type genus is Peptostreptococcus, originally described by Kluyver and van Niel in 1936. ^[3] Recent taxonomic revisions have added several other genera like Acetoanaerobium, Filifactor, Proteocatella, Sporacetigenium, and Tepidibacter to this family, with members largely characterized by their morphology and function. ^[4] More recent studies have also advocated the inclusion of new genera from a closely related clade, including Peptostreptococcus, Asaccharospora, Clostridioides, Intestinibacter, Paeniclostridium, Paraclostridium, Peptacetobacter, Romboutsia, and Terrisporobacter using 16rRNA gene sequences to support the addition. ^[4]

Gut Microbiome

Several members of the Peptostreptococcaceae are well known inhabitants of the digestive tract. Microbiome studies of animal feces have corroborated this. Notably, an unclassified group of Peptostreptococcaceae has been reported making up a significant portion of the microbial community in domestic cats, ^[5] while other studies have not found a significant presence of Peptostreptococcaceae. ^[5] Peptostreptococcaceae have been found to be enriched in the gut microbiota of blood drinking species such as vampire bats and the vampire ground finch. ^[6]

Peptostreptococcus species occupy a specialized niche in the rumen of dairy cows, sheep, and deer as peptide- and amino acid-degrading microorganisms. By producing high levels of ammonia, these bacteria play a crucial role in nitrogen recycling within the rumen ecosystem. ^[7]

Pathogenesis in Humans

Clostridioides difficile is a notable human pathogen in this family. Peptostreptococcaceae have been of interest for several other bowel diseases as biological marker or causative agent. Decreased abundance has been reported for Crohn's disease, ^[8] while the genus Peptostreptococcus appears to be more common in patients diagnosed with colorectal cancer. ^[9]

Filifactor alocis has been isolated from human oral cavities with gingivitis and is responsible for biofilm formation of periodontitis. ^[10] An increased abundance of Peptostreptococcus genus can lead to increased risk of acute noma disease and necrotizing gingivitis. ^[11]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) ^[1] and National Center for Biotechnology Information (NCBI) ^[12]

16S rRNA based LTP_10_2024 [13] [14] [15]

120 marker proteins based GTDB 09-RS220 [16] [17] [18]

Peptoclostridiaceae Peptoclostridium Filifactoraceae Acetoanaerobium Proteocatella Filifactor Criibacterium Peptoanaerobacter Eubacterium yurii Margaret & Krywolap 1986 Peptostreptococcaceae Sporacetigenium Chen, Song & Dong 2006 Alkalithermobacter Tepidibacter Clostridioides [incl. Metaclostridioides ] Peptacetobacter Peptostreptococcus Intestinibacter Terrisporobacter Romboutsia Asaccharospora Paraclostridium [incl. Paeniclostridium ]

Filifactoraceae Proteocatella Pikuta et al. 2009 Filifactor Collins et al. 1994 Acetoanaerobium Sleat, Mah & Robinson 1985 Criibacterium Maheux et al. 2021 Peptoanaerobacter Sizova et al. 2016 Peptostreptococcaceae Peptoclostridium Galperin et al. 2016 non Donker 1926 non Yutin & Galperin 2013 Alkalithermobacter Bello et al. 2024 Tepidibacter Slobodkin et al. 2003 Peptacetobacter Chen et al. 2020 Peptostreptococcus Kluyver & van Niel 1936 Metaclostridioides Bello et al. 2024 Clostridioides Lawson et al. 2016 Asaccharospora Gerritsen et al. 2014 Romboutsia faecisLiu et al. 2022 Intestinibacter Gerritsen et al. 2014 Terrisporobacter Gerritsen et al. 2014 Romboutsia species-group 2 Romboutsia Gerritsenet al. 2014 Romboutsia hominisGerritsen et al. 2018 Faecalimicrobium Lo et al. 2013 ex Bello et al. 2024 Romboutsia species-group 3 Paraclostridium Sasi Jyothsna et al. 2016 [incl. Paeniclostridium Sasi Jyothsna et al. 2016]

See also

• List of bacterial orders
• List of bacteria genera

References

1. A.C. Parte; et al. "Peptostreptococcaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-09-09.
2. Rosenberg, Eugene; DeLong, Edward F.; Lory, Stephen; Stackebrandt, Erko; Thompson, Fabiano, eds. (2014). The Prokaryotes: Firmicutes and Tenericutes. Berlin, Heidelberg: Springer Berlin Heidelberg. doi:10.1007/978-3-642-30120-9. ISBN   978-3-642-30119-3.
3. Parte, Aidan C. (2013-11-15). "LPSN—list of prokaryotic names with standing in nomenclature". Nucleic Acids Research. 42 (D1): D613 –D616. doi:10.1093/nar/gkt1111. ISSN   0305-1048.
4. Bello, Sarah; McQuay, Sarah; Rudra, Bashudev; Gupta, Radhey S. (February 2024). "Robust demarcation of the family Peptostreptococcaceae and its main genera based on phylogenomic studies and taxon-specific molecular markers". International Journal of Systematic and Evolutionary Microbiology. 74 (2). doi:10.1099/ijsem.0.006247. ISSN   1466-5034. PMID   38319314.
5. Bermingham EN, Young W, Butowski CF, Moon CD, Maclean PH, Rosendale D, et al. (2018). "The Fecal Microbiota in the Domestic Cat (Felis catus) Is Influenced by Interactions Between Age and Diet; A Five Year Longitudinal Study". Frontiers in Microbiology. 9: 1231. doi: 10.3389/fmicb.2018.01231 . PMC   6018416 . PMID   29971046.
6. Song, Se Jin; Sander, Jon G.; Baldassarre, Daniel T.; Chaves, Jaime A.; Johnson, Nicholas S.; Piaggio, Antoinette J.; Stuckey, Matthew J.; Nováková, Eva; Metcalf, Jessica L.; Chomel, Bruno B.; Aguilar-Setién, Alvaro; Knight, Rob; McKenzie, Valerie J. (2019). "Is there convergence of gut microbes in blood-feeding vertebrates?". Philosophical Transactions of the Royal Society B. 374 (1777): 374(1777). doi:10.1098/rstb.2018.0249. PMC   6560276 . PMID   31154984.
7. Paster, B. J.; Russell, J. B.; Yang, C. M.; Chow, J. M.; Woese, C. R.; Tanner, R. (January 1993). "Phylogeny of the ammonia-producing ruminal bacteria Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov". International Journal of Systematic Bacteriology. 43 (1): 107–110. doi:10.1099/00207713-43-1-107. ISSN   0020-7713. PMID   8427801.
8. Pascal V, Pozuelo M, Borruel N, Casellas F, Campos D, Santiago A, et al. (May 2017). "A microbial signature for Crohn's disease". Gut. 66 (5): 813–822. doi:10.1136/gutjnl-2016-313235. PMC   5531220 . PMID   28179361.
9. Ahn J, Sinha R, Pei Z, Dominianni C, Wu J, Shi J, et al. (December 2013). "Human gut microbiome and risk for colorectal cancer". Journal of the National Cancer Institute. 105 (24): 1907–1911. doi:10.1093/jnci/djt300. PMC   3866154 . PMID   24316595.
10. Moffatt, C.E.; Whitmore, S.E.; Griffen, A.L.; Leys, E.J.; Lamont, R.J. (December 2011). "Filifactor alocis interactions with gingival epithelial cells". Molecular Oral Microbiology. 26 (6): 365–373. doi:10.1111/j.2041-1014.2011.00624.x. ISSN   2041-1006. PMC   3248241 . PMID   22053964.
11. Bolivar, Ignacio; Whiteson, Katrine; Stadelmann, Benoît; Baratti-Mayer, Denise; Gizard, Yann; Mombelli, Andrea; Pittet, Didier; Schrenzel, Jacques; Noma (GESNOMA), The Geneva Study Group on (2012-03-06). "Bacterial Diversity in Oral Samples of Children in Niger with Acute Noma, Acute Necrotizing Gingivitis, and Healthy Controls". PLOS Neglected Tropical Diseases. 6 (3): e1556. doi: 10.1371/journal.pntd.0001556 . ISSN   1935-2735. PMC   3295795 . PMID   22413030.
12. Sayers; et al. "Peptostreptococcaceae". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-09-09.
13. "The LTP" . Retrieved 10 December 2024.
14. "LTP_all tree in newick format" . Retrieved 10 December 2024.
15. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
16. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
17. "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
18. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.