Autotaxin

Last updated

ENPP2
3nkr.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases ENPP2 , ATX, ATX-X, AUTOTAXIN, LysoPLD, NPP2, PD-IALPHA, PDNP2, ectonucleotide pyrophosphatase/phosphodiesterase 2
External IDs OMIM: 601060; MGI: 1321390; HomoloGene: 4526; GeneCards: ENPP2; OMA:ENPP2 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001040092
NM_001130863
NM_006209
NM_001330600

NM_001136077
NM_015744
NM_001285994
NM_001285995

RefSeq (protein)

NP_001035181
NP_001124335
NP_001317529
NP_006200

NP_001129549
NP_001272923
NP_001272924
NP_056559

Location (UCSC) Chr 8: 119.56 – 119.67 Mb Chr 15: 54.84 – 54.95 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Autotaxin, also known as ectonucleotide pyrophosphatase/phosphodiesterase family member 2 (E-NPP 2), is an enzyme that in humans is encoded by the ENPP2 gene. [5] [6]

Contents

Function

Autotaxin is a secreted enzyme important for generating the lipid signaling molecule lysophosphatidic acid (LPA). Autotaxin has lysophospholipase D activity that converts lysophosphatidylcholine into LPA.

Autotaxin was originally identified as a tumor cell-motility-stimulating factor; later it was shown to be LPA (which signals through lysophospholipid receptors), the lipid product of the reaction catalyzed by autotaxin, which is responsible for its effects on cell-proliferation.

The protein encoded by this gene functions as a phosphodiesterase. Autotaxin is secreted and further processed to make the biologically active form. Several alternatively spliced transcript variants have been identified. Autotaxin is able to cleave the phosphodiester bond between the α and the β position of triphosphate nucleotides, acting as an ectonucleotide phosphodiesterase producing pyrophosphate, as most members of the ENPP family [7] . Importantly, autotaxin also acts as phospholipase, catalyzing the removal of the head group of various lysolipids. The physiological function of autotaxin is the production of the signalling lipid lysophosphatidic acid (LPA) in extracellular fluids. LPA evokes growth factor-like responses including stimulation of cell proliferation and chemotaxis. This gene product stimulates the motility of tumor cells, has angiogenic properties, and its expression is up-regulated in several kinds of tumours. [6] Also, autotaxin and LPA are involved in numerous inflammatory-driven diseases such as asthma and arthritis. [8] Physiologically, LPA helps promote wound healing responses to tissue damage. Under normal circumstances, LPA negatively regulates autotaxin transcription, but in the context of wound repair, cytokines induce autotaxin expression to increase overall LPA concentrations. [9]

As a drug target

Autotaxin contains a tripartite binding site composed of a zinc-dependent catalytic center, a hydrophilic groove, and a hydrophobic pocket [10] . Based on how inhibitors interact with this site, ATX inhibitors can be classified into six types: Type I compounds occupy the orthosteric site, mimicking the LPC substrate binding [11] [12] ; Type II inhibitors bind solely to the hydrophobic pocket, blocking LPC accommodation [13] [14] ; Type III inhibitors occupy the allosteric regulatory tunnel, modulating ATX activity non-competitively [15] [16] ; Type IV compounds occupy both the binding pocket and the tunnel without contacting the catalytic site [17] [18] ; Type V inhibitors occupy the allosteric tunnel and the orthosteric site [19] ; and Type VI compounds engage all three regions—the orthosteric site, allosteric tunnel, and hydrophobic pocket [20] .

A type IV inhibitor, Ziritaxestat (GLPG1690), against idiopathic pulmonary fibrosis [18] showed promising results in a phase II trial that ended in May 2018 [21] . It has been shown that THC is also a partial autotaxin inhibitor, with an apparent IC50 of 407 ± 67 nM for the ATX-gamma isoform. [22] THC was also co-crystallized with autotaxin, deciphering the binding interface of the complex. These results might explain some of the effects of THC on inflammation and neurological diseases, since autotaxin is responsible of LPA generation, a key lipid mediator involved in numerous diseases and physiological processes. However, clinical trials need to be performed in order to assess the importance of ATX inhibition by THC during medicinal cannabis consumption. Development of cannabinoid inspired autotaxin inhibitors could also be an option in the future. A DNA aptamer inhibitor of Autotaxin has also been described. [23]

Structure

The crystal structures of rat and mouse autotaxin [24] have been solved. In each case, the apo structure has been solved along with those of product- or inhibitor-bound complexes. Both proteins consist of 4 domains, including 2 N-terminal somatomedin-B-like (SMB) domains which may be involved in cell-surface localisation. The catalytic domain follows and contains a deep hydrophobic pocket in which the lipid substrate binds. At the C-terminus is the inactive nuclease domain which may function to aid protein stability.

See also

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000136960 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000022425 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Kawagoe H, Soma O, Goji J, Nishimura N, Narita M, Inazawa J, et al. (November 1995). "Molecular cloning and chromosomal assignment of the human brain-type phosphodiesterase I/nucleotide pyrophosphatase gene (PDNP2)". Genomics. 30 (2): 380–4. doi:10.1006/geno.1995.0036. hdl: 20.500.14094/D1001481 . PMID   8586446.
  6. 1 2 "Entrez Gene: ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 (autotaxin)".
  7. Borza R, Salgado-Polo F, Moolenaar WH, Perrakis A (2022-02-01). "Structure and function of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family: Tidying up diversity". Journal of Biological Chemistry. 298 (2) 101526. doi: 10.1016/j.jbc.2021.101526 . ISSN   0021-9258. PMC   8808174 . PMID   34958798.
  8. Benesch MG, Ko YM, McMullen TP, Brindley DN (August 2014). "Autotaxin in the crosshairs: taking aim at cancer and other inflammatory conditions". FEBS Letters. 588 (16): 2712–27. Bibcode:2014FEBSL.588.2712B. doi:10.1016/j.febslet.2014.02.009. PMID   24560789. S2CID   35544825.
  9. Benesch MG, Zhao YY, Curtis JM, McMullen TP, Brindley DN (June 2015). "Regulation of autotaxin expression and secretion by lysophosphatidate and sphingosine 1-phosphate". Journal of Lipid Research. 56 (6): 1134–44. doi: 10.1194/jlr.M057661 . PMC   4442871 . PMID   25896349.
  10. Salgado-Polo F, Perrakis A (2019-10-16). "The Structural Binding Mode of the Four Autotaxin Inhibitor Types that Differentially Affect Catalytic and Non-Catalytic Functions". Cancers. 11 (10): 1577. doi: 10.3390/cancers11101577 . ISSN   2072-6694. PMC   6826961 . PMID   31623219.
  11. Baker DL, Fujiwara Y, Pigg KR, Tsukahara R, Kobayashi S, Murofushi H, et al. (2006-08-11). "Carba analogs of cyclic phosphatidic acid are selective inhibitors of autotaxin and cancer cell invasion and metastasis". The Journal of Biological Chemistry. 281 (32): 22786–22793. Bibcode:2006JBiCh.28122786B. doi: 10.1074/jbc.M512486200 . ISSN   0021-9258. PMC   3505596 . PMID   16782709.
  12. Nikitopoulou I, Kaffe E, Sevastou I, Sirioti I, Samiotaki M, Madan D, et al. (2013-07-29). "A Metabolically-Stabilized Phosphonate Analog of Lysophosphatidic Acid Attenuates Collagen-Induced Arthritis". PLOS ONE. 8 (7): e70941. Bibcode:2013PLoSO...870941N. doi: 10.1371/journal.pone.0070941 . ISSN   1932-6203. PMC   3726599 . PMID   23923032.{{cite journal}}: CS1 maint: article number as page number (link)
  13. Stein AJ, Bain G, Prodanovich P, Santini AM, Darlington J, Stelzer NM, et al. (2015-12-01). "Structural Basis for Inhibition of Human Autotaxin by Four Potent Compounds with Distinct Modes of Binding". Molecular Pharmacology. 88 (6): 982–992. doi:10.1124/mol.115.100404. ISSN   0026-895X. PMID   26371182.
  14. Jiang G, Madan D, Prestwich GD (2011-09-01). "Aromatic phosphonates inhibit the lysophospholipase D activity of autotaxin". Bioorganic & Medicinal Chemistry Letters. Tetrahedron Young Investigator Award 2011: Carolyn R. Bertozzi. 21 (17): 5098–5101. doi:10.1016/j.bmcl.2011.03.068. ISSN   0960-894X. PMC   3140587 . PMID   21489790.
  15. Stein AJ, Bain G, Prodanovich P, Santini AM, Darlington J, Stelzer NM, et al. (2015-12-01). "Structural Basis for Inhibition of Human Autotaxin by Four Potent Compounds with Distinct Modes of Binding". Molecular Pharmacology. 88 (6): 982–992. doi:10.1124/mol.115.100404. ISSN   0026-895X. PMID   26371182.
  16. Miller LM, Keune WJ, Castagna D, Young LC, Duffy EL, Potjewyd F, et al. (2017-01-26). "Structure–Activity Relationships of Small Molecule Autotaxin Inhibitors with a Discrete Binding Mode". Journal of Medicinal Chemistry. 60 (2): 722–748. doi:10.1021/acs.jmedchem.6b01597. ISSN   0022-2623. PMID   27982588.
  17. Keune WJ, Potjewyd F, Heidebrecht T, Salgado-Polo F, Macdonald SJ, Chelvarajan L, et al. (2017-03-09). "Rational Design of Autotaxin Inhibitors by Structural Evolution of Endogenous Modulators". Journal of Medicinal Chemistry. 60 (5): 2006–2017. doi:10.1021/acs.jmedchem.6b01743. ISSN   0022-2623. PMID   28165241.
  18. 1 2 Salgado-Polo F, Borza R, Matsoukas MT, Marsais F, Jagerschmidt C, Waeckel L, et al. (2023-01-19). "Autotaxin facilitates selective LPA receptor signaling". Cell Chemical Biology. 30 (1): 69–84.e14. doi:10.1016/j.chembiol.2022.12.006. ISSN   2451-9456. PMID   36640760.
  19. Clark JM, Salgado-Polo F, Macdonald SJ, Barrett TN, Perrakis A, Jamieson C (2022-04-28). "Structure-Based Design of a Novel Class of Autotaxin Inhibitors Based on Endogenous Allosteric Modulators". Journal of Medicinal Chemistry. 65 (8): 6338–6351. doi:10.1021/acs.jmedchem.2c00368. ISSN   0022-2623. PMC   9059126 . PMID   35440138.
  20. Desroy N, Borza R, Heiermann J, Triballeau N, Joncour A, Bienvenu N, et al. (2025-07-01). "Design, Synthesis, and Biological Implications of Autotaxin inhibitors with a Three-Point lock binding mode". Bioorganic & Medicinal Chemistry. 124 118181. doi:10.1016/j.bmc.2025.118181. ISSN   0968-0896. PMID   40233422.
  21. Clinical trial number NCT02738801 for "Study to Assess Safety, Tolerability, Pharmacokinetic and Pharmacodynamic Properties of GLPG1690" at ClinicalTrials.gov
  22. Eymery MC, McCarthy AA, Hausmann J (February 2023). "Linking medicinal cannabis to autotaxin-lysophosphatidic acid signaling". Life Science Alliance. 6 (2): e202201595. doi:10.26508/lsa.202201595. PMC   9834664 . PMID   36623871.{{cite journal}}: CS1 maint: article number as page number (link)
  23. Kato K, Ikeda H, Miyakawa S, Futakawa S, Nonaka Y, Fujiwara M, et al. (May 2016). "Structural basis for specific inhibition of Autotaxin by a DNA aptamer". Nature Structural & Molecular Biology. 23 (5): 395–401. doi:10.1038/nsmb.3200. PMID   27043297. S2CID   24948842.
  24. Nishimasu H, Okudaira S, Hama K, Mihara E, Dohmae N, Inoue A, et al. (February 2011). "Crystal structure of autotaxin and insight into GPCR activation by lipid mediators". Nature Structural & Molecular Biology. 18 (2): 205–12. doi:10.1038/nsmb.1998. PMID   21240269. S2CID   6336916.

Further reading