| Autographiviridae | |
|---|---|
 | |
Virus classification  | |
| (unranked): | Virus |
| Realm: | Duplodnaviria |
| Kingdom: | Heunggongvirae |
| Phylum: | Uroviricota |
| Class: | Caudoviricetes |
| Order: | Caudovirales |
| Family: | Autographiviridae |
| Genera | |
| Synonyms | |
| |
Autographiviridae is a family of viruses in the order Caudovirales . Bacteria serve as natural hosts. There are 373 species in this family, assigned to 9 subfamilies and 133 genera. [1] [2]
Since the 1990s, the term "T7 supergroup" has been coined for the expanding group of bacteriophages related to coliphage T7, as members of the family Podoviridae . Enterobacteriaceae phages SP6 and K1-5 were the first to be considered as an estranged subgroup of the "T7 supergroup". [3] Pseudomonas phage phiKMV also shared commonalities at the genome organizational level. As such, based on the available morphological and proteomic data, this clade of viruses was established as a subfamily of the family Podoviridae . The subfamily was later raised to the level of family in 2019. [4]
The name of this family, termed Autographiviridae, refers to the “auto-graphein” or “self-transcribing” phages which encode their own (single subunit) RNA polymerase, a common characteristic among its members.[ citation needed ]
Viruses in Autographiviridae are non-enveloped, with icosahedral and Head-tail geometries, and T=7 symmetry. The diameter is around 60 nm. Genomes are linear, around 40-42kb in length. [1]
Viral replication is cytoplasmic. DNA templated transcription is the method of transcription. The virus exits the host cell by lysis, and holin/endolysin/spanin proteins. Bacteria serve as the natural host. Transmission routes are passive diffusion. [1]
The following subfamilies are recognized: [2]
The following genera are unassigned to a subfamily: [2]
Myoviridae is a family of bacteriophages in the order Caudovirales. Bacteria and archaea serve as natural hosts. There are 625 species in this family, assigned to eight subfamilies and 217 genera.
Podoviridae is a family of bacteriophage in the order Caudovirales often associated with T-7 like phages. There are 130 species in this family, assigned to 3 subfamilies and 52 genera. This family is characterized by having very short, noncontractile tails. Podoviradae are largely understudied and most new isolates are of the phicbkviruses genus, a group of giant viruses that appear to be Caulobacter specific.
Filamentous bacteriophages are a family of viruses (Inoviridae) that infect bacteria, or bacteriophages. They are named for their filamentous shape, a worm-like chain, about 6 nm in diameter and about 1000-2000 nm long. This distinctive shape reflects their method of replication: the coat of the virion comprises five types of viral protein, which are located in the inner membrane of the host bacterium during phage assembly, and these proteins are added to the nascent virion's DNA as it is extruded through the membrane. The simplicity of filamentous phages makes them an appealing model organism for research in molecular biology, and they have also shown promise as tools in nanotechnology and immunology.
Cystovirus is a genus of double-stranded RNA viruses which infects bacteria. It is the only genus in the family Cystoviridae. The name of the group cysto derives from Greek kystis which means bladder or sack. There are seven species in this genus.
Fiersviridae is a family of positive-strand RNA viruses which infect prokaryotes. Bacteria serve as the natural host. They are small viruses with linear, positive-sense, single-stranded RNA genomes that encode four proteins. All phages of this family require bacterial pili to attach to and infect cells. The family has 185 genera, most discovered by metagenomics. In 2020, the family was renamed from Leviviridae to its current name.
Caudoviricetes is a class of viruses known as the tailed bacteriophages. Under the Baltimore classification scheme, the Caudoviricetes are group I viruses as they have double stranded DNA (dsDNA) genomes, which can be anywhere from 18,000 base pairs to 500,000 base pairs in length. The virus particles have a distinct shape; each virion has an icosahedral head that contains the viral genome, and is attached to a flexible tail by a connector protein. The order encompasses a wide range of viruses, many containing genes of similar nucleotide sequence and function. However, some tailed bacteriophage genomes can vary quite significantly in nucleotide sequence, even among the same genus. Due to their characteristic structure and possession of potentially homologous genes, it is believed these bacteriophages possess a common origin.
Bacteriophage T7 is a bacteriophage, a virus that infects bacteria. It infects most strains of Escherichia coli and relies on these hosts to propagate. Bacteriophage T7 has a lytic life cycle, meaning that it destroys the cell it infects. It also possesses several properties that make it an ideal phage for experimentation: its purification and concentration have produced consistent values in chemical analyses; it can be rendered noninfectious by exposure to UV light; and it can be used in phage display to clone RNA binding proteins.
Tectiviridae is a family of viruses with 10 species in five genera. Bacteria serve as natural hosts. Tectiviruses have no head-tail structure, but are capable of producing tail-like tubes of ~ 60×10 nm upon adsorption or after chloroform treatment. The name is derived from Latin tectus.
Corticovirus is a genus of viruses in the family Corticoviridae. Corticoviruses are bacteriophages; that is, their natural hosts are bacteria. The genus contains two species. The name is derived from Latin cortex, corticis. However, prophages closely related to PM2 are abundant in the genomes of aquatic bacteria, suggesting that the ecological importance of corticoviruses might be underestimated. Bacteriophage PM2 was first described in 1968 after isolation from seawater sampled from the coast of Chile.
Picovirinae is a subfamily of viruses in the order Caudovirales, in the family Salasmaviridae. Bacteria serve as natural hosts. There are two genera and seven species in this subfamily.
Phikmvvirus is a genus of viruses that infect bacteria. There are currently 16 species in this genus including the type species Pseudomonas virus phiKMV. Bacteriophage phiKMV and its relatives are known to be highly virulent phages, producing large clear plaques on a susceptible host. The only reported exception is phage LKA1, which yields small plaques surrounded by a halo. While all other P. aeruginosa-specific phikmvviruses use the Type IV pili as primary receptor, LKA1 particles attach to the bacterial lipopolysaccharide layer.
Rauchvirus is a genus of viruses in the order Caudovirales, in the family Podoviridae. Bacteria serve as natural hosts. The genus contains only one species: Bordetella virus BPP1.
Enquatrovirus is a genus of bacteriophages in the order Caudovirales, in the family Podoviridae. Bacteria serve as natural hosts. There is currently only one species in this genus: the type species Escherichia virus N4.
Uetakevirus is a genus of viruses in the order Caudovirales, in the family Podoviridae. Bacteria serve as natural hosts. There are three species in this genus. These phages are temperate and infect Salmonella and Escherichia coli.
Phikzvirus is a genus of viruses in the order Caudovirales, in the family Myoviridae. Bacteria serve as natural hosts. There are three species in this genus.
Zindervirus is a genus of viruses in the family Autographiviridae, within the subfamily Molineuxvirinae. Bacteria serve as the natural host, with transmission achieved through passive diffusion. There are currently three species in this genus, including the type species Salmonella virus SP6.
Teseptimavirus is a genus of viruses in the order Caudovirales, in the family Autographiviridae, in the subfamily Studiervirinae. Bacteria serve as the natural host, with transmission achieved through passive diffusion. There are currently 17 species in this genus, including the type species Escherichia virus T7.
Salasvirus is a genus of viruses in the order Caudovirales, in the family Salasmaviridae, in the subfamily Picovirinae. Bacteria serve as natural hosts. There are four species in this genus.
Lederbergvirus is a genus of viruses in the order Caudovirales, in the family Podoviridae. Bacteria serve as natural hosts, with transmission achieved through passive diffusion. There are six species in this genus.
Tequintavirus is a genus of viruses in the order Caudovirales, in the family Demerecviridae. Bacteria serve as the natural host, with transmission achieved through passive diffusion. There are currently 22 species in this genus, including the type species Escherichia virus T5.
