| Anelloviridae | |
|---|---|
Virus classification  | |
| (unranked): | Virus |
| Family: | Anelloviridae |
| Genera | |
See text | |
Anelloviridae is a family of viruses. They are classified as vertebrate viruses and have a non-enveloped capsid, which is round with isometric, icosahedral symmetry and has a triangulation number of 3.
The name is derived from Italian anello 'ring', referring to the circular genome of anelloviruses.
The genome is not segmented and contains a single molecule of circular, negative-sense, single-stranded DNA. The complete genome is 3000–4000 nucleotides long. [1] They also contain a non-coding region with one to two 80–110 nt sequences that contain high GC content, forming a secondary structure of stems and loops. [2] The genome has ORFs and a high degree of genetic diversity. [3]
Although the mechanism of replication has not been studied heavily, anelloviridae appears to use the rolling circle mechanism where first ssDNA is converted to dsDNA. It requires a host polymerase for replication to occur as the genome itself does not encode for a viral polymerase and, as a result, anelloviridae must replicate inside the cell's nucleus. [4]
Anelloviridae also have two main open reading frames, ORF1 and ORF2. They initiate at two different AUG codons. [5] Additional ORFs can be formed as well. These ORFs may overlap partially. [2]
ORF1 is thought to encode the putative capsid protein and replication-associated protein of anelloviruses. The specific role of these replication-associated proteins are still being studied. [6]
ORF2 is thought to either encode a protein with phosphatase activity (TTMVs) or a peptide that suppresses the NF-B pathways (TTVs). [7] It was seen to have a highly conserved motif in the N-terminal part.
Anellovirus species are highly prevalent and genetically diverse. Their virome has been present in most humans. They enter in the cell early in life and replicate persistently. [8] This happens in the first month of life. It remains debated whether or not the first infection is symptomatic or not, however. They are probably repressed by host immunity, as the anelloviruses increase during host immunosuppression. [5]
The overall prevalence in the general population is over 90% and has been found in all continents. [2] They cause chronic human viral infections that have not yet been associated with disease. There is also no evidence of viral clearance following infection. [5] At least 200 different species are present in humans and animals. [9]
It has been shown that there are multiple methods of transmission such as saliva droplets and maternal or sexual routes. [2]
Most genera has a name pattern of a certain (Greek, Arabic or Hebrew) letter+torquevirus with the exception of gyrovirus, as Alphatorquevirus (where torque means necklace) is one of the first genera to represent the family. The family contains the following genera: [10]
Parvoviruses are a family of animal viruses that constitute the family Parvoviridae. They have linear, single-stranded DNA (ssDNA) genomes that typically contain two genes encoding for a replication initiator protein, called NS1, and the protein the viral capsid is made of. The coding portion of the genome is flanked by telomeres at each end that form into hairpin loops that are important during replication. Parvovirus virions are small compared to most viruses, at 23–28 nanometers in diameter, and contain the genome enclosed in an icosahedral capsid that has a rugged surface.
Hepadnaviridae is a family of viruses. Humans, apes, and birds serve as natural hosts. There are currently 18 species in this family, divided among 5 genera. Its best-known member is hepatitis B virus. Diseases associated with this family include: liver infections, such as hepatitis, hepatocellular carcinomas, and cirrhosis. It is the sole accepted family in the order Blubervirales.
Geminiviridae is a family of plant viruses that encode their genetic information on a circular genome of single-stranded (ss) DNA. There are 520 species in this family, assigned to 14 genera. Diseases associated with this family include: bright yellow mosaic, yellow mosaic, yellow mottle, leaf curling, stunting, streaks, reduced yields. They have single-stranded circular DNA genomes encoding genes that diverge in both directions from a virion strand origin of replication. According to the Baltimore classification they are considered class II viruses. It is the largest known family of single stranded DNA viruses.
Circoviridae is a family of DNA viruses. Birds and mammals serve as natural hosts. There are 101 species in this family, assigned to 2 genera. Diseases associated with this family include: PCV-2: postweaning multisystemic wasting syndrome; CAV: chicken infectious anemia.
Totiviridae is a family of double-stranded RNA viruses. Giardia lamblia, leishmania, trichomonas vaginalis, and fungi serve as natural hosts. The name of the group derives from Latin toti which means undivided or whole. There are 28 species in this family, assigned to 5 genera.
Potyviridae is a family of positive-strand RNA viruses that encompasses more than 30% of known plant viruses, many of which are of great agricultural significance. The family has 12 genera and 235 species, three of which are unassigned to a genus.
Tombusviridae is a family of single-stranded positive sense RNA plant viruses. There are three subfamilies, 17 genera, and 95 species in this family. The name is derived from Tomato bushy stunt virus (TBSV).
Baltimore classification is a system used to classify viruses based on their manner of messenger RNA (mRNA) synthesis. By organizing viruses based on their manner of mRNA production, it is possible to study viruses that behave similarly as a distinct group. Seven Baltimore groups are described that take into consideration whether the viral genome is made of deoxyribonucleic acid (DNA) or ribonucleic acid (RNA), whether the genome is single- or double-stranded, and whether the sense of a single-stranded RNA genome is positive or negative.
Porcine circovirus (PCV) is a group of four single-stranded DNA viruses that are non-enveloped with an unsegmented circular genome. They are members of the genus Circovirus that can infect pigs. The viral capsid is icosahedral and approximately 17 nm in diameter.
Sapovirus is a genetically diverse genus of single-stranded positive-sense RNA, non-enveloped viruses within the family Caliciviridae. Together with norovirus, sapoviruses are the most common cause of acute gastroenteritis in humans and animals. It is a monotypic taxon containing only one species, the Sapporo virus.
Tectiviridae is a family of viruses with 10 species in five genera. Bacteria serve as natural hosts. Tectiviruses have no head-tail structure, but are capable of producing tail-like tubes of ~ 60×10 nm upon adsorption or after chloroform treatment. The name is derived from Latin tectus.
Gyrovirus is a genus of viruses, in the family Anelloviridae. Until 2011, chicken anemia virus was the only Gyrovirus identified, but since then gyroviruses have also been identified in humans. Diseases associated with this genus include: chicken infectious anemia, which is associated with depletion of cortical thymocytes and erythroblastoid cells.
Sobemovirus is a genus of non-enveloped, positive-strand RNA viruses which infect plants.. Plants serve as natural hosts. There are 21 species in this genus. Diseases associated with this genus include: mosaics and mottles.
Bocaparvovirus is a genus of viruses in the subfamily Parvovirinae of the virus family Parvoviridae. Humans, cattle, and dogs serve as natural hosts. There are 28 species in this genus. Diseases associated with this genus include, in humans, acute respiratory illness, and in cattle, diarrhea and mild respiratory symptoms.
Circovirus is a genus of viruses, in the family Circoviridae. Birds and pigs serve as natural hosts, though dogs have been shown to be infected as well. It is a single stranded DNA virus (ssDNA). There are 49 species in this genus. Some members of this genus cause disease: PCV-1 is non pathogenic, while PCV-2 causes postweaning multisystemic wasting syndrome (PMWS).
Spiraviridae is a family of incertae sedis viruses that replicate in hyperthermophilic archaea of the genus Aeropyrum, specifically Aeropyrum pernix. The family contains one genus, Alphaspiravirus, which contains one species, Aeropyrum coil-shaped virus. The virions of ACV are non-enveloped and in the shape of hollow cylinders that are formed by a coiling fiber that consists of two intertwining halves of the circular DNA strand inside a capsid. An appendage protrudes from each end of the cylindrical virion. The viral genome is ssDNA(+) and encodes for significantly more genes than other known ssDNA viruses. ACV is also unique in that it appears to lack its own enzymes to aid replication, instead likely using the host cell's replisomes. ACV has no known relation to any other archaea-infecting viruses, but it does share its coil-like morphology with some other archaeal viruses, suggesting that such viruses may be an ancient lineage that only infect archaea.
Torque teno sus virus, belonging to the family Anelloviridae, is a group of virus strains that are non-enveloped, with a single-stranded circular DNA genome ranging from 2.6 to 2.8 kb in size. These swine infecting anelloviruses are divided into two genera: Iotatorquevirus and Kappatorquevirus. Torque teno sus virus has been found in pigs worldwide. TTSuVs are mainly transmitted by fecal-oral route. The prevalence of these viruses is relatively high. For now, there is not known disease caused exclusively by TTSuV. There is the possibility that TTSuV may worsen the progression of other diseases and therefore increase the economic losses for pig industry.
Riboviria is a realm of viruses that includes all viruses that use a homologous RNA-dependent polymerase for replication. It includes RNA viruses that encode an RNA-dependent RNA polymerase, as well as reverse-transcribing viruses that encode an RNA-dependent DNA polymerase. RNA-dependent RNA polymerase (RdRp), also called RNA replicase, produces RNA from RNA. RNA-dependent DNA polymerase (RdDp), also called reverse transcriptase (RT), produces DNA from RNA. These enzymes are essential for replicating the viral genome and transcribing viral genes into messenger RNA (mRNA) for translation of viral proteins.
In virology, realm is the highest taxonomic rank established for viruses by the International Committee on Taxonomy of Viruses (ICTV), which oversees virus taxonomy. Six virus realms are recognized and united by specific highly conserved traits:
Monodnaviria is a realm of viruses that includes all single-stranded DNA viruses that encode an endonuclease of the HUH superfamily that initiates rolling circle replication of the circular viral genome. Viruses descended from such viruses are also included in the realm, including certain linear single-stranded DNA (ssDNA) viruses and circular double-stranded DNA (dsDNA) viruses. These atypical members typically replicate through means other than rolling circle replication.
