Nodaviridae

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Nodaviridae
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Crystal structure of grouper nervous necrosis virus a piscine betanodavirus
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(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Kitrinoviricota
Class: Magsaviricetes
Order: Nodamuvirales
Family:Nodaviridae

Nodaviridae is a family of nonenveloped positive-strand RNA viruses. [1] Vertebrates and invertebrates serve as natural hosts. Diseases associated with this family include: viral encephalopathy and retinopathy in fish. There are nine species in the family, assigned to two genera. [2] [3]

Contents

History

The name of the family is derived from the Japanese village of Nodamura, Iwate Prefecture where Nodamura virus was first isolated from Culex tritaeniorhynchus mosquitoes.[ citation needed ]

Virology

Structure

The virus is not enveloped and has an icosahedral capsid (triangulation number = 3) ranging from 29 to 35 nm in diameter. The capsid is constructed of 32 capsomers. [2]

Genome

Flock House virus genome and functional map of replicase protein A. Elife-25940-fig1-v2.jpg
Flock House virus genome and functional map of replicase protein A.

The genome is linear, positive sense, bipartite (composed of two segments – RNA1 and RNA2) single stranded RNA consisting of 4500 nucleotides with a 5’ terminal methylated cap and a non-polyadenylated 3’ terminal. [2]

RNA1, which is ~3.1 kilobases in length, encodes a protein that has multiple functional domains: a mitochondrial targeting domain, a transmembrane domain, an RNA-dependent RNA polymerase (RdRp) domain, a self-interaction domain and an RNA capping domain. In addition, RNA1 encodes a subgenomic RNA3 that encodes protein B2, an RNA silencing inhibitor. [2]

RNA2 encodes protein α, a viral capsid protein precursor, which is auto-cleaved into two mature proteins, a 38 kDa β protein and a 5 kDa γ protein, at a conserved Asn/Ala site during virus assembly. [2]

Life cycle

Viral replication is cytoplasmic. Entry into the host cell is achieved by penetration into the host cell. Replication follows the positive stranded RNA virus replication model. Positive stranded RNA virus transcription, using the internal initiation model of subgenomic RNA transcription is the method of transcription. Vertebrates and invertebrates serve as the natural host. Transmission routes are contact and contamination. [2] [3]

Taxonomy

The members of the genus Alphanodavirus were originally isolated from insects while those of the genus Betanodavirus were isolated from fish. A small number of nodoviruses seem to lie outside either of these clades. [2] Flock house virus (FHV) is the best studied of the nodaviruses. [2] There are nine species in this family, assigned to two genera: [2]

Related Research Articles

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<i>Hepadnaviridae</i> Family of viruses

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<span class="mw-page-title-main">Rubella virus</span> Species of virus

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<i>Birnaviridae</i> Family of viruses

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<i>Totiviridae</i> Family of viruses

Totiviridae is a family of double-stranded RNA viruses. Giardia lamblia, leishmania, trichomonas vaginalis, and fungi serve as natural hosts. The name of the group derives from Latin toti which means undivided or whole. There are 28 species in this family, assigned to 5 genera.

Pseudoviridae is a family of viruses, which includes three genera.

<i>Barnaviridae</i> Family of viruses

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<i>Nepovirus</i> Genus of viruses

Nepovirus is a genus of viruses in the order Picornavirales, in the family Secoviridae, in the subfamily Comovirinae. Plants serve as natural hosts. There are 40 species in this genus. Nepoviruses, unlike the other two genera in the subfamily Comovirinae, are transmitted by nematodes.

<i>Iridoviridae</i> Family of viruses

Iridoviridae is a family of viruses with double-stranded DNA genomes. Amphibians, fish, and invertebrates such as arthropods serve as natural hosts. There are currently 22 species in this family, divided among two subfamilies and seven genera.

<i>Lagovirus</i> Genus of viruses

Lagovirus is a genus of viruses, in the family Caliciviridae. Lagomorphs serve as natural hosts. There are two species in this genus. Diseases associated with this genus include: necrotizing hepatitis leading to fatal hemorrhages.

<i>Betanodavirus</i> Genus of viruses

Betanodavirus, or nervous necrosis virus (NNV), is a genus of nonenveloped positive-strand RNA viruses in the family Nodaviridae. Member viruses infect fish and cause viral nervous necrosis (VNN) and viral encephalopathy and retinopathy (VER). The genus contains four species.

<i>Alphanodavirus</i> Genus of viruses

Alphanodavirus is a genus of non-enveloped positive-strand RNA viruses in the family Nodaviridae. Insects, mammals, and fishes serve as natural hosts. Diseases associated with this genus include: Nodamura virus paralysis in infected wax moth larvae. Member viruses can also provoke paralysis and death to suckling mice and suckling hamsters. There are five species in this genus.

<i>Nodamura virus</i> Species of virus

Nodamura virus (NoV) is a member of the family Nodaviridae, which was originally isolated from mosquitoes in Japan near the village of Nodamura in 1956. Other members of Nodaviridae are flock house virus (FHV) and black beetle virus (BBV). NoV has been found to multiply in several insect and tick species; however, these infected individuals seem to be asymptomatic. Nodamura virus is the only member of the genus Alphanodavirus that can infect insects, fish, and mammals.

Orsay virus is a positive-sense single-stranded RNA virus that infects Caenorhabditis elegans nematode. It resembles nodaviruses, but has yet to be formally classified.

Flock House virus (FHV) is in the Alphanodavirus genus of the Nodaviridae family of viruses. Flock House virus was isolated from a grass grub at the Flock House research station in Bulls, New Zealand. FHV is an extensively studied virus and is considered a model system for the study of other non-enveloped RNA viruses owing to its small size and genetic tractability, particularly to study the role of the transiently exposed hydrophobic gamma peptide and the metastability of the viral capsid. FHV can be engineered in insect cell culture allowing for the tailored production of native or mutant authentic virions or virus-like-particles. FHV is a platform for nanotechnology and nanomedicine, for example, for epitope display and vaccine development. Viral entry into host cells occurs via receptor-mediated endocytosis. Receptor binding initiates a sequence of events during which the virus exploits the host environment in order to deliver the viral cargo in to the host cytosol. Receptor binding prompts the meta-stability of the capsid–proteins, the coordinated rearrangements of which are crucial for subsequent steps in the infection pathway. In addition, the transient exposure of a covalently-independent hydrophobic γ-peptide is responsible for breaching cellular membranes and is thus essential for the viral entry of FHV into host cells.

<i>Avian metaavulavirus 2</i> Species of virus

Avian metaavulavirus 2, formerly Avian paramyxovirus 2, is a species of virus belonging to the family Paramyxoviridae and genus Metaavulavirus. The virus is a negative strand RNA virus containing a monopartite genome. Avian metaavulavirus 2 is one of nine species belonging to the genus Metaavulavirus. The most common serotype of Avulavirinae is serotype 1, the cause of Newcastle disease (ND). Avian metaavulavirus 2 has been known to cause disease, specifically mild respiratory infections in domestic poultry, including turkeys and chickens, and has many economic effects on egg production and poultry industries. The virus was first isolated from a strain in Yucaipa, California in 1956. Since then, other isolates of the virus have been isolated worldwide.

Black beetle virus (BBV) is a virus that was initially discovered in the North Island of New Zealand in Helensville in dead New Zealand black beetles in 1975.

<span class="mw-page-title-main">Negative-strand RNA virus</span> Phylum of viruses

Negative-strand RNA viruses are a group of related viruses that have negative-sense, single-stranded genomes made of ribonucleic acid (RNA). They have genomes that act as complementary strands from which messenger RNA (mRNA) is synthesized by the viral enzyme RNA-dependent RNA polymerase (RdRp). During replication of the viral genome, RdRp synthesizes a positive-sense antigenome that it uses as a template to create genomic negative-sense RNA. Negative-strand RNA viruses also share a number of other characteristics: most contain a viral envelope that surrounds the capsid, which encases the viral genome, −ssRNA virus genomes are usually linear, and it is common for their genome to be segmented.

References

  1. Sahul Hameed, AS; Ninawe, AS; Nakai, T; Chi, SC; Johnson, KL; ICTV Report, Consortium (January 2019). "ICTV Virus Taxonomy Profile: Nodaviridae". The Journal of General Virology. 100 (1): 3–4. doi: 10.1099/jgv.0.001170 . PMID   30431412. S2CID   53435394.
  2. 1 2 3 4 5 6 7 8 9 "ICTV Report Nodaviridae".
  3. 1 2 "Viral Zone". ExPASy. Retrieved 15 June 2015.