Treponema

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Treponema
Treponema pallidum 01.png
Treponema pallidum spirochaetes
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Spirochaetota
Class: Spirochaetia
Order: Spirochaetales
Family: Treponemataceae
Genus: Treponema
Schaudinn 1905 emend. Abt, Göker & Klenk 2013
Type species
Treponema pallidum
(Schaudinn & Hoffmann 1905) Schaudinn 1905
Species [1]

See text

Synonyms

Treponema is a genus of spiral-shaped bacteria. The major treponeme species of human pathogens is Treponema pallidum , whose subspecies are responsible for diseases such as syphilis, bejel, and yaws. Treponema carateum is the cause of pinta. [2] Treponema paraluiscuniculi is associated with syphilis in rabbits. [3] Treponema succinifaciens has been found in the gut microbiome of traditional rural human populations. [4]

Contents

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [5] and National Center for Biotechnology Information (NCBI). [1]

16S rRNA based LTP_10_2024 [6] [7] [8] 120 marker proteins based GTDB 09-RS220 [9] [10] [11]
Treponemataceae

Gracilinema caldarium(Pohlschröder, Leschine & Canale-Parola 1995) Brune et al. 2022

Zuelzera stenostrepta(Zuelzer 1912) Brune et al. 2022

Breznakiella homolacticaSong et al. 2022

Treponema primitia Graber, Leadbetter & Breznak 2004

Helmutkoenigia isoptericolens (Dröge et al. 2008) Brune et al. 2022

Leadbettera azotonutricia (Graber et al. 2004) Brune et al. 2022

Brucepastera parasyntrophicaSong et al. 2023

Teretinema zuelzerae(Canale-Parola 1980) Song et al. 2023

Treponema

T. mediumUmemoto et al. 1997

T. phagedenis(Noguchi 1912) Brumpt 1922 ex Kuhnert et al. 2020

T. pedisEvans et al. 2009

T. denticola (Flügge 1886) Brumpt 1925 ex Chan et al. 1993

T. putidumWyss et al. 2004

s.s.
Treponema

T. brennaborenseSchrank et al. 1999

T. lecithinolyticum Wyss et al. 1999

T. maltophilum Wyss et al. 1996

T. ruminisNewbrook et al. 2017

T. saccharophilumPaster & Canale-Parola 1986

T. rectaleStaton et al. 2017

T. peruenseBelkhou et al. 2021

T. succinifaciens Cwyk and Canale-Parola 1981

T. berlinenseNordhoff et al. 2005

T. pectinovorumSmibert & Burmeister 1983

T. bryantii Stanton & Canale-Parola 1980

T. porcinumNordhoff et al. 2005

T. amylovorumWyss et al. 1997

T. parvumWyss et al. 2001 non Dobell 1912

T. socranskii

T. s. paredisSmibert, Johnson & Ranney 1984

T. s. buccaleSmibert, Johnson & Ranney 1984

T. s. socranskiiSmibert, Johnson & Ranney 1984

speciesgroup 2
Breznakiellaceae

Gracilinema caldarium

Treponemataceae

Brucepastera parasyntrophica

Teretinema zuelzerae

"Ca. Avitreponema avistercoris" Gilroy et al. 2021

Treponema

T. pedis

T. denticola

T. putidum

T. medium

" T. vincentii " (Blanchard 1906) Brumpt 1922 ex Smibert 1984

T. pallidum (Schaudinn & Hoffmann 1905) Schaudinn 1905 [incl. Treponema paraluiscuniculi (Jacobsthal 1920) Smibert 1974]

T. phagedenis

s.s.

"Ca. Gallitreponema excrementavium" Gilroy et al. 2021

Treponema

"Ca. Treponema faecavium" Gilroy et al. 2021

Treponema brennaborense

"Ca. Treponema excrementipullorum" Gilroy et al. 2021

Treponema parvum

Treponema bryantii

Treponema porcinum

Treponema socranskii

Treponema socranskii buccale

Treponema socranskii paredis

Treponema rectale

Treponema peruense

T. succinifaciens

Treponema berlinense

Treponema pectinovorum

Treponema ruminis

Treponema saccharophilum

"Treponema zioleckii" Piknova et al. 2008

speciesgroup 2
s.s.

Unassigned Treponema species:

The species Treponema hyodysenteriae and Treponema innocens have been reclassified into Brachyspira hyodysenteriae and Brachyspira innocens . [12]

See also

Related Research Articles

<span class="mw-page-title-main">Syphilis</span> Sexually transmitted infection

Syphilis is a sexually transmitted infection caused by the bacterium Treponema pallidum subspecies pallidum. The signs and symptoms depend on the stage it presents: primary, secondary, latent or tertiary. The primary stage classically presents with a single chancre, though there may be multiple sores. In secondary syphilis, a diffuse rash occurs, which frequently involves the palms of the hands and soles of the feet. There may also be sores in the mouth or vagina. Latent syphilis has no symptoms and can last years. In tertiary syphilis, there are gummas, neurological problems, or heart symptoms. Syphilis has been known as "the great imitator", because it may cause symptoms similar to many other diseases.

<i>Treponema pallidum</i> Species of bacterium

Treponema pallidum, formerly known as Spirochaeta pallida, is a microaerophilic, gram-negative, spirochaete bacterium with subspecies that cause the diseases syphilis, bejel, and yaws. It is known to be transmitted only among humans and baboons. T. pallidum can enter the host through mucosal membranes or open lesions in the skin and is primarily spread through sexual contact. It is a helically coiled microorganism usually 6–15 μm long and 0.1–0.2 μm wide. T. pallidum's lack of both a tricarboxylic acid cycle and processes for oxidative phosphorylation results in minimal metabolic activity. As a chemoorganoheterotroph, Treponema pallidum is an obligate parasite that acquires its glucose carbon source from its host. Glucose can be used not only as a primary carbon source but also in glycolytic mechanisms to generate ATP needed to power the bacterium given its minimal genome. The treponemes have cytoplasmic and outer membranes. Using light microscopy, treponemes are visible only by using dark-field illumination. T. pallidum consists of three subspecies, T. p. pallidum, T. p. endemicum, and T. p. pertenue, each of which has a distinct related disorder. The ability of T. pallidum to avoid host immune defenses has allowed for stealth pathogenicity. The unique outer membrane structure and minimal expression of surface proteins of T. pallidum has made vaccine development difficult. Treponema pallidum can be treated with high efficacy by antibiotics that inhibit bacterial cell wall synthesis such as the beta-lactam antimicrobial penicillin-G.

<span class="mw-page-title-main">Spirochaete</span> Phylum of bacteria

A spirochaete or spirochete is a member of the phylum Spirochaetota, which contains distinctive diderm (double-membrane) Gram-negative bacteria, most of which have long, helically coiled cells. Spirochaetes are chemoheterotrophic in nature, with lengths between 3 and 500 μm and diameters around 0.09 to at least 3 μm.

<span class="mw-page-title-main">Yaws</span> Medical condition

Yaws is a tropical infection of the skin, bones, and joints caused by the spirochete bacterium Treponema pallidum pertenue. The disease begins with a round, hard swelling of the skin, 2 to 5 cm in diameter. The center may break open and form an ulcer. This initial skin lesion typically heals after 3–6 months. After weeks to years, joints and bones may become painful, fatigue may develop, and new skin lesions may appear. The skin of the palms of the hands and the soles of the feet may become thick and break open. The bones may become misshapen. After 5 years or more, large areas of skin may die, leaving scars.

<span class="mw-page-title-main">Spirochaetales</span> Order of bacteria

The Spirochaetales are an order of spirochete bacteria. Some species within this order are known to causes syphilis, Lyme disease, relapsing fever, and other illnesses.

<span class="mw-page-title-main">Nonvenereal endemic syphilis</span> Medical condition

Bejel, or endemic syphilis, is a chronic skin and tissue disease caused by infection by the endemicum subspecies of the spirochete Treponema pallidum. Bejel is one of the "endemic treponematoses", a group that also includes yaws and pinta. Typically, endemic trepanematoses begin with localized lesions on the skin or mucous membranes. Pinta is limited to affecting the skin, whereas bejel and yaws are considered to be invasive because they can also cause disease in bone and other internal tissues.

Natrinema is a genus of the Natrialbaceae.

Natronorubrum is a genus in the family Halobacteriaceae.

In taxonomy, Methanocorpusculum is a genus of microbes within the family Methanocorpusculaceae. The species within Methanocorpusculum were first isolated from biodisgester wastewater and activated sludge from anaerobic digestors. In nature, they live in freshwater environments. Unlike most other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow.

Treponematosis is a term used to individually describe any of the diseases caused by four members of the bacterial genus Treponema. The four diseases are collectively referred to as treponematoses:

The Synergistota is a phylum of anaerobic bacteria that show Gram-negative staining and have rod/vibrioid cell shape. Although Synergistota have a diderm cell envelope, the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota, indicating that they may have an atypical outer cell envelope. The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts, soil, oil wells, and wastewater treatment plants and they are also present in sites of human diseases such as cysts, abscesses, and areas of periodontal disease. Due to their presence at illness related sites, the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora. Species within this phylum have also been implicated in periodontal disease, gastrointestinal infections and soft tissue infections. Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas. All of the known Synergistota species and genera are presently part of a single class (Synergistia), order (Synergistiales), and family (Synergistaceae).

The phylum Elusimicrobiota, previously known as "Termite Group 1", has been shown to be widespread in different ecosystems like marine environment, sewage sludge, contaminated sites and soils, and toxic wastes. The high abundance of Elusimicrobiota representatives is only seen for the lineage of symbionts found in termites and ants.

Armatimonadota is a phylum of gram-negative bacteria.

<i>Treponema pallidum</i> particle agglutination assay Assay used for detection and titration of antibodies against the causative agent of syphilis

The Treponema pallidum particle agglutination assay is an indirect agglutination assay used for detection and titration of antibodies against the causative agent of syphilis, Treponema pallidum subspecies pallidum. It also detects other treponematoses.

<span class="mw-page-title-main">History of syphilis</span>

The first recorded outbreak of syphilis in Europe occurred in 1494/1495 in Naples, Italy, during a French invasion. Because it was spread geographically by French troops returning from that campaign, the disease was known as "French disease", and it was not until 1530 that the term "syphilis" was first applied by the Italian physician and poet Girolamo Fracastoro. The causative organism, Treponema pallidum, was first identified by Fritz Schaudinn and Erich Hoffmann in 1905 at the Charité Clinic in Berlin. The first effective treatment, Salvarsan, was developed in 1910 by Sahachiro Hata in the laboratory of Paul Ehrlich. It was followed by the introduction of penicillin in 1943.

Brachyspira is a genus of bacteria classified within the phylum Spirochaetota.

Brachyspira innocens is a species of bacteria. It is thought to be a commensal bacterium.

<i>Carboxydocella</i> Genus of bacteria

Carboxydocella is a Gram-positive and obligate anaerobe bacterial genus from the family of Syntrophomonadaceae.

Desulfonatronovibrio is a Gram-negative, vibrios, anaerobic and motile genus of bacteria from the family of Desulfohalobiaceae with a single polar flagellum.

<span class="mw-page-title-main">Treponemataceae</span> Family of bacteria

The Treponemataceae are a family of spirochete bacteria. The clade includes a number of significant pathogens, such as Treponemapallidum, the cause of human syphilis.

References

  1. 1 2 Sayers; et al. "Treponema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-03-20.
  2. Antal GM, Lukehart SA, Meheus AZ (January 2002). "The endemic treponematoses". Microbes Infect. 4 (1): 83–94. doi:10.1016/S1286-4579(01)01513-1. PMID   11825779.
  3. Harper KN, Liu H, Ocampo PS, et al. (August 2008). "The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis". FEMS Immunol. Med. Microbiol. 53 (3): 322–32. doi: 10.1111/j.1574-695X.2008.00427.x . PMID   18554302.
  4. Angelakis E, Bachar D, Yasir M, Musso D, Djossou F, Gaborit B, et al. (January 2019). "Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals". New Microbes and New Infections. 27: 14–21. doi:10.1016/j.nmni.2018.10.009. PMC   6276622 . PMID   30555706. (This paper currently has an expression of concern, see doi:10.1016/j.nmni.2024.101401, PMID   38799921,  Retraction Watch . If this is an intentional citation to a such a paper, please replace {{ expression of concern |...}} with {{ expression of concern |...|intentional=yes}}.)
  5. J.P. Euzéby. "Treponema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-03-20.
  6. "The LTP" . Retrieved 10 December 2024.
  7. "LTP_all tree in newick format" . Retrieved 10 December 2024.
  8. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  9. "GTDB release 09-RS220". Genome Taxonomy Database . Retrieved 10 May 2024.
  10. "bac120_r220.sp_labels". Genome Taxonomy Database . Retrieved 10 May 2024.
  11. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2024.
  12. Stanton TB, Jensen NS, Casey TA, Tordoff LA, Dewhirst FE, Paster BJ (January 1991). "Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov". Int. J. Syst. Bacteriol. 41 (1): 50–8. doi: 10.1099/00207713-41-1-50 . PMID   1704792.