Treponema

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Treponema
Treponema pallidum 01.png
Treponema pallidum spirochaetes
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Spirochaetota
Class: Spirochaetia
Order: Spirochaetales
Family: Treponemataceae
Genus: Treponema
Schaudinn 1905 emend. Abt, Göker & Klenk 2013
Type species
Treponema pallidum
(Schaudinn & Hoffmann 1905) Schaudinn 1905
Species [1]

See text

Synonyms

Treponema is a genus of spiral-shaped bacteria. The major treponeme species of human pathogens is Treponema pallidum , whose subspecies are responsible for diseases such as syphilis, bejel, and yaws. Treponema carateum is the cause of pinta. [2] Treponema paraluiscuniculi is associated with syphilis in rabbits. [3] Treponema succinifaciens has been found in the gut microbiome of traditional rural human populations. [4]

Contents

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [5] and National Center for Biotechnology Information (NCBI). [1]

16S rRNA based LTP_08_2023 [6] [7] [8] 120 marker proteins based GTDB 08-RS214 [9] [10] [11]
Treponemataceae

Gracilinema caldarium(Pohlschröder, Leschine & Canale-Parola 1995) Brune et al. 2022

Zuelzera stenostrepta(Zuelzer 1912) Brune et al. 2022

Breznakiella homolacticaSong et al. 2022

Helmutkoenigia isoptericolens (Dröge et al. 2008) Brune et al. 2022

Leadbettera azotonutricia (Graber et al. 2004) Brune et al. 2022

Treponema primitia Graber, Leadbetter & Breznak 2004

Brucepastera parasyntrophicaSong et al. 2023

Teretinema zuelzerae(Canale-Parola 1980) Song et al. 2023

Treponema

T. mediumUmemoto et al. 1997

T. phagedenis(Noguchi 1912) Brumpt 1922 ex Kuhnert et al. 2020

T. denticola (Flügge 1886) Brumpt 1925 ex Chan et al. 1993

T. pedisEvans et al. 2009

T. putidumWyss et al. 2004

s.s.
Treponema

T. brennaborenseSchrank et al. 1999

T. lecithinolyticum Wyss et al. 1999

T. maltophilum Wyss et al. 1996

T. pectinovorumSmibert & Burmeister 1983

T. bryantii Stanton & Canale-Parola 1980

T. rectaleStaton et al. 2017

T. berlinenseNordhoff et al. 2005

T. porcinumNordhoff et al. 2005

T. peruenseBelkhou et al. 2021

T. succinifaciens Cwyk and Canale-Parola 1981

T. ruminisNewbrook et al. 2017

T. saccharophilumPaster & Canale-Parola 1986

T. amylovorumWyss et al. 1997

T. parvumWyss et al. 2001 non Dobell 1912

T. socranskii

T. s. paredisSmibert, Johnson & Ranney 1984

T. s. buccaleSmibert, Johnson & Ranney 1984

T. s. socranskiiSmibert, Johnson & Ranney 1984

speciesgroup 2
Breznakiellaceae

Gracilinema caldarium

Breznakiella homolactica

Leadbettera azotonutricia

Treponema primitia

Treponemataceae

"Ca. Gallitreponema excrementavium" Gilroy et al. 2021

"Ca. Avitreponema avistercoris" Gilroy et al. 2021

Brucepastera parasyntrophica

Treponema

T. pedis

T. denticola

T. putidum

T. medium

" T. vincentii " (Blanchard 1906) Brumpt 1922 ex Smibert 1984

T. pallidum (Schaudinn & Hoffmann 1905) Schaudinn 1905 [incl. Treponema paraluiscuniculi (Jacobsthal 1920) Smibert 1974]

T. phagedenis

s.s.
Treponema

Treponema brennaborense

"Ca. Treponema excrementipullorum" Gilroy et al. 2021

Treponema lecithinolyticum

Treponema maltophilum

Treponema bryantii

Treponema porcinum

Treponema parvum

Treponema socranskii

Treponema peruense

Treponema rectale

T. succinifaciens

Treponema berlinense

Treponema pectinovorum

Treponema ruminis

Treponema saccharophilum

"Treponema zioleckii" Piknova et al. 2008

speciesgroup 2
s.s.

Unassigned species:

The species Treponema hyodysenteriae and Treponema innocens have been reclassified into Serpulina hyodysenteriae and Serpulina innocens . [12]

See also

Related Research Articles

<i>Treponema pallidum</i> Species of bacterium

Treponema pallidum, formerly known as Spirochaeta pallida, is a microaerophilic spirochaete bacterium with subspecies that cause the diseases syphilis, bejel, and yaws. It is transmitted only among humans. It is a helically coiled microorganism usually 6–15 μm long and 0.1–0.2 μm wide. T. pallidum's lack of either a tricarboxylic acid cycle or oxidative phosphorylation results in minimal metabolic activity. The treponemes have a cytoplasmic and an outer membrane. Using light microscopy, treponemes are visible only by using dark-field illumination. T. pallidum consists of three subspecies, T. p. pallidum, T. p. endemicum, and T. p. pertenue, each of which has a distinct associated disease.

<span class="mw-page-title-main">Spirochaete</span> Phylum of bacteria

A spirochaete or spirochete is a member of the phylum Spirochaetota, which contains distinctive diderm (double-membrane) gram-negative bacteria, most of which have long, helically coiled cells. Spirochaetes are chemoheterotrophic in nature, with lengths between 3 and 500 μm and diameters around 0.09 to at least 3 μm.

The Thermoprotei is a class of the Thermoproteota.

<span class="mw-page-title-main">Nonvenereal endemic syphilis</span> Medical condition

Bejel, or endemic syphilis, is a chronic skin and tissue disease caused by infection by the endemicum subspecies of the spirochete Treponema pallidum. Bejel is one of the "endemic treponematoses", a group that also includes yaws and pinta. Typically, endemic trepanematoses begin with localized lesions on the skin or mucous membranes. Pinta is limited to affecting the skin, whereas bejel and yaws are considered to be invasive because they can also cause disease in bone and other internal tissues.

<i>Erysipelothrix</i> Genus of bacteria

Erysipelothrix is a genus of bacteria containing four described species, Erysipelothrix rhusiopathiae, Erysipelothrix tonsillarum, Erysipelothrix inopinata and Erysipelothrix larvae. Additional species have been proposed based on DNA-DNA hybridization studies "The hallmark of Erysipelothrix is the presence of a type B cell wall, in which the peptide bridge is formed between amino acids at positions 2 and 4 of adjacent peptide side-chains and not, as in the vast majority of bacteria, between amino acids at positions 3 and 4."

Fibrobacterota is a small bacterial phylum which includes many of the major rumen bacteria, allowing for the degradation of plant-based cellulose in ruminant animals. Members of this phylum were categorized in other phyla. The genus Fibrobacter was removed from the genus Bacteroides in 1988.

<span class="mw-page-title-main">Erysipelotrichaceae</span> Family of bacteria

The Erysipelotrichaceae are a family of Gram-positive bacteria.

In taxonomy, the Methanocaldococcaceae are a family of microbes within the order Methanococcales. It contains two genera, the type genus Methanocaldococcus and Methanotorris. These species are coccoid in form, neutrophilic to slightly acidophilic, and predominantly motile, and they have a very short generation period, from 25 to 45 minutes under optimal conditions. They produce energy exclusively through the reduction of carbon dioxide with hydrogen. Some species have been found in marine hydrothermal vents.

In taxonomy, Methanococcoides is a genus of the Methanosarcinaceae.

Haladaptatus is a genus of halophilic archaea in the family of Halobacteriaceae. The members of Haladaptatus thrive in environments with salt concentrations approaching saturation

Halobaculum is a genus of the Halorubraceae.

Halobiforma is a genus of halophilic archaea of the family Natrialbaceae.

Halomicrobium is a genus of the Haloarculaceae.

In taxonomy, Haloplanus is a genus of the Halobacteriaceae.

Natrinema is a genus of the Natrialbaceae.

In taxonomy, Methanocorpusculum is a genus of microbes within the family Methanocorpusculaceae. The species within Methanocorpusculum were first isolated from biodisgester wastewater and activated sludge from anaerobic digestors. In nature, they live in freshwater environments. Unlike most other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow.

Armatimonadota is a phylum of gram-negative bacteria.

Brachyspira is a genus of bacteria classified within the phylum Spirochaetota.

Brachyspira innocens is a species of bacteria. It is thought to be a commensal bacterium.

<span class="mw-page-title-main">Treponemataceae</span> Family of bacteria

The Treponemataceae are a family of spirochete bacteria. The clade includes a number of significant pathogens, such as Treponemapallidum, the cause of human syphilis.

References

  1. 1 2 Sayers; et al. "Treponema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-03-20.
  2. Antal GM, Lukehart SA, Meheus AZ (January 2002). "The endemic treponematoses". Microbes Infect. 4 (1): 83–94. doi:10.1016/S1286-4579(01)01513-1. PMID   11825779.
  3. Harper KN, Liu H, Ocampo PS, et al. (August 2008). "The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis". FEMS Immunol. Med. Microbiol. 53 (3): 322–32. doi: 10.1111/j.1574-695X.2008.00427.x . PMID   18554302.
  4. Angelakis E, Bachar D, Yasir M, Musso D, Djossou F, Gaborit B, et al. (January 2019). "Treponema species enrich the gut microbiota of traditional rural populations but are absent from urban individuals". New Microbes and New Infections. 27: 14–21. doi:10.1016/j.nmni.2018.10.009. PMC   6276622 . PMID   30555706.
  5. J.P. Euzéby. "Treponema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-03-20.
  6. "The LTP" . Retrieved 20 November 2023.
  7. "LTP_all tree in newick format" . Retrieved 20 November 2023.
  8. "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
  9. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  11. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
  12. Stanton TB, Jensen NS, Casey TA, Tordoff LA, Dewhirst FE, Paster BJ (January 1991). "Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov". Int. J. Syst. Bacteriol. 41 (1): 50–8. doi: 10.1099/00207713-41-1-50 . PMID   1704792.