Probability density function | |||
Cumulative distribution function | |||
Parameters | |||
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Support | |||
CDF | |||
Mean | |||
Median | No simple closed form | No simple closed form | |
Mode | , | ||
Variance | |||
Skewness | |||
Excess kurtosis | |||
Entropy | |||
MGF | |||
CF | |||
Fisher information | |||
Method of moments |
In probability theory and statistics, the gamma distribution is a versatile two-parameter family of continuous probability distributions. [1] The exponential distribution, Erlang distribution, and chi-squared distribution are special cases of the gamma distribution. [2] There are two equivalent parameterizations in common use:
In each of these forms, both parameters are positive real numbers.
The distribution has important applications in various fields, including econometrics, Bayesian statistics, life testing. [3] In econometrics, the (α, θ) parameterization is common for modeling waiting times, such as the time until death, where it often takes the form of an Erlang distribution for integer α values. Bayesian statisticians prefer the (α,λ) parameterization, utilizing the gamma distribution as a conjugate prior for several inverse scale parameters, facilitating analytical tractability in posterior distribution computations. The probability density and cumulative distribution functions of the gamma distribution vary based on the chosen parameterization, both offering insights into the behavior of gamma-distributed random variables. The gamma distribution is integral to modeling a range of phenomena due to its flexible shape, which can capture various statistical distributions, including the exponential and chi-squared distributions under specific conditions. Its mathematical properties, such as mean, variance, skewness, and higher moments, provide a toolset for statistical analysis and inference. Practical applications of the distribution span several disciplines, underscoring its importance in theoretical and applied statistics. [4]
The gamma distribution is the maximum entropy probability distribution (both with respect to a uniform base measure and a base measure) for a random variable X for which E[X] = αθ = α/λ is fixed and greater than zero, and E[ln X] = ψ(α) + ln θ = ψ(α) − ln λ is fixed (ψ is the digamma function). [5]
The parameterization with α and θ appears to be more common in econometrics and other applied fields, where the gamma distribution is frequently used to model waiting times. For instance, in life testing, the waiting time until death is a random variable that is frequently modeled with a gamma distribution. See Hogg and Craig [6] for an explicit motivation.
The parameterization with α and λ is more common in Bayesian statistics, where the gamma distribution is used as a conjugate prior distribution for various types of inverse scale (rate) parameters, such as the λ of an exponential distribution or a Poisson distribution [7] – or for that matter, the λ of the gamma distribution itself. The closely related inverse-gamma distribution is used as a conjugate prior for scale parameters, such as the variance of a normal distribution.
If α is a positive integer, then the distribution represents an Erlang distribution; i.e., the sum of α independent exponentially distributed random variables, each of which has a mean of θ.
The gamma distribution can be parameterized in terms of a shape parameter α and an inverse scale parameter λ = 1/θ, called a rate parameter. A random variable X that is gamma-distributed with shape α and rate λ is denoted
The corresponding probability density function in the shape-rate parameterization is
where is the gamma function. For all positive integers, .
The cumulative distribution function is the regularized gamma function:
where is the lower incomplete gamma function.
If α is a positive integer (i.e., the distribution is an Erlang distribution), the cumulative distribution function has the following series expansion: [8]
A random variable X that is gamma-distributed with shape α and scale θ is denoted by
The probability density function using the shape-scale parametrization is
Here Γ(α) is the gamma function evaluated at α.
The cumulative distribution function is the regularized gamma function:
where is the lower incomplete gamma function.
It can also be expressed as follows, if α is a positive integer (i.e., the distribution is an Erlang distribution): [8]
Both parametrizations are common because either can be more convenient depending on the situation.
The mean of gamma distribution is given by the product of its shape and scale parameters: The variance is: The square root of the inverse shape parameter gives the coefficient of variation:
The skewness of the gamma distribution only depends on its shape parameter, α, and it is equal to
The n-th raw moment is given by:
Unlike the mode and the mean, which have readily calculable formulas based on the parameters, the median does not have a closed-form equation. The median for this distribution is the value such that
A rigorous treatment of the problem of determining an asymptotic expansion and bounds for the median of the gamma distribution was handled first by Chen and Rubin, who proved that (for ) where is the mean and is the median of the distribution. [9] For other values of the scale parameter, the mean scales to , and the median bounds and approximations would be similarly scaled by θ.
K. P. Choi found the first five terms in a Laurent series asymptotic approximation of the median by comparing the median to Ramanujan's function. [10] Berg and Pedersen found more terms: [11]
Partial sums of these series are good approximations for high enough α; they are not plotted in the figure, which is focused on the low-α region that is less well approximated.
Berg and Pedersen also proved many properties of the median, showing that it is a convex function of α, [12] and that the asymptotic behavior near is (where γ is the Euler–Mascheroni constant), and that for all the median is bounded by . [11]
A closer linear upper bound, for only, was provided in 2021 by Gaunt and Merkle, [13] relying on the Berg and Pedersen result that the slope of is everywhere less than 1: for (with equality at ) which can be extended to a bound for all by taking the max with the chord shown in the figure, since the median was proved convex. [12]
An approximation to the median that is asymptotically accurate at high α and reasonable down to or a bit lower follows from the Wilson–Hilferty transformation: which goes negative for .
In 2021, Lyon proposed several approximations of the form . He conjectured values of A and B for which this approximation is an asymptotically tight upper or lower bound for all . [14] In particular, he proposed these closed-form bounds, which he proved in 2023: [15]
is a lower bound, asymptotically tight as is an upper bound, asymptotically tight as
Lyon also showed (informally in 2021, rigorously in 2023) two other lower bounds that are not closed-form expressions, including this one involving the gamma function, based on solving the integral expression substituting 1 for : (approaching equality as ) and the tangent line at where the derivative was found to be : (with equality at ) where Ei is the exponential integral. [14] [15]
Additionally, he showed that interpolations between bounds could provide excellent approximations or tighter bounds to the median, including an approximation that is exact at (where ) and has a maximum relative error less than 0.6%. Interpolated approximations and bounds are all of the form where is an interpolating function running monotonially from 0 at low α to 1 at high α, approximating an ideal, or exact, interpolator : For the simplest interpolating function considered, a first-order rational function the tightest lower bound has and the tightest upper bound has The interpolated bounds are plotted (mostly inside the yellow region) in the log–log plot shown. Even tighter bounds are available using different interpolating functions, but not usually with closed-form parameters like these. [14]
If Xi has a Gamma(αi, θ) distribution for i = 1, 2, ..., N (i.e., all distributions have the same scale parameter θ), then
provided all Xi are independent.
For the cases where the Xi are independent but have different scale parameters, see Mathai [16] or Moschopoulos. [17]
The gamma distribution exhibits infinite divisibility.
If
then, for any c > 0,
by moment generating functions,
or equivalently, if
(shape-rate parameterization)
Indeed, we know that if X is an exponential r.v. with rate λ, then cX is an exponential r.v. with rate λ/c; the same thing is valid with Gamma variates (and this can be checked using the moment-generating function, see, e.g.,these notes, 10.4-(ii)): multiplication by a positive constant c divides the rate (or, equivalently, multiplies the scale).
The gamma distribution is a two-parameter exponential family with natural parameters α − 1 and −1/θ (equivalently, α − 1 and −λ), and natural statistics X and ln X.
If the shape parameter α is held fixed, the resulting one-parameter family of distributions is a natural exponential family.
One can show that
or equivalently,
where ψ is the digamma function. Likewise,
where is the trigamma function.
This can be derived using the exponential family formula for the moment generating function of the sufficient statistic, because one of the sufficient statistics of the gamma distribution is ln x.
The information entropy is
In the α, θ parameterization, the information entropy is given by
The Kullback–Leibler divergence (KL-divergence), of Gamma(αp, λp) ("true" distribution) from Gamma(αq, λq) ("approximating" distribution) is given by [18]
Written using the α, θ parameterization, the KL-divergence of Gamma(αp, θp) from Gamma(αq, θq) is given by
The Laplace transform of the gamma PDF, which is the moment-generating function of the gamma distribution, is
(where is a random variable with that distribution).
If the shape parameter of the gamma distribution is known, but the inverse-scale parameter is unknown, then a gamma distribution for the inverse scale forms a conjugate prior. The compound distribution, which results from integrating out the inverse scale, has a closed-form solution known as the compound gamma distribution. [22]
If, instead, the shape parameter is known but the mean is unknown, with the prior of the mean being given by another gamma distribution, then it results in K-distribution.
The gamma distribution can be expressed as the product distribution of a Weibull distribution and a variant form of the stable count distribution. Its shape parameter can be regarded as the inverse of Lévy's stability parameter in the stable count distribution: where is a standard stable count distribution of shape , and is a standard Weibull distribution of shape .
The likelihood function for N iid observations (x1, ..., xN) is
from which we calculate the log-likelihood function
Finding the maximum with respect to θ by taking the derivative and setting it equal to zero yields the maximum likelihood estimator of the θ parameter, which equals the sample mean divided by the shape parameter α:
Substituting this into the log-likelihood function gives
We need at least two samples: , because for , the function increases without bounds as . For , it can be verified that is strictly concave, by using inequality properties of the polygamma function. Finding the maximum with respect to α by taking the derivative and setting it equal to zero yields
where ψ is the digamma function and is the sample mean of ln x. There is no closed-form solution for α. The function is numerically very well behaved, so if a numerical solution is desired, it can be found using, for example, Newton's method. An initial value of k can be found either using the method of moments, or using the approximation
If we let
then α is approximately
which is within 1.5% of the correct value. [23] An explicit form for the Newton–Raphson update of this initial guess is: [24]
At the maximum-likelihood estimate , the expected values for x and agree with the empirical averages:
For data, , that is represented in a floating point format that underflows to 0 for values smaller than , the logarithms that are needed for the maximum-likelihood estimate will cause failure if there are any underflows. If we assume the data was generated by a gamma distribution with cdf , then the probability that there is at least one underflow is: This probability will approach 1 for small α and large N. For example, at , and , . A workaround is to instead have the data in logarithmic format.
In order to test an implementation of a maximum-likelihood estimator that takes logarithmic data as input, it is useful to be able to generate non-underflowing logarithms of random gamma variates, when . Following the implementation in scipy.stats.loggamma
, this can be done as follows: [25] sample and independently. Then the required logarithmic sample is , so that .
There exist consistent closed-form estimators of α and θ that are derived from the likelihood of the generalized gamma distribution. [26]
The estimate for the shape α is
and the estimate for the scale θ is
Using the sample mean of x, the sample mean of ln x, and the sample mean of the product x·ln x simplifies the expressions to:
If the rate parameterization is used, the estimate of .
These estimators are not strictly maximum likelihood estimators, but are instead referred to as mixed type log-moment estimators. They have however similar efficiency as the maximum likelihood estimators.
Although these estimators are consistent, they have a small bias. A bias-corrected variant of the estimator for the scale θ is
A bias correction for the shape parameter α is given as [27]
With known α and unknown θ, the posterior density function for theta (using the standard scale-invariant prior for θ) is
Denoting
Integration with respect to θ can be carried out using a change of variables, revealing that 1/θ is gamma-distributed with parameters α = Nα, λ = y.
The moments can be computed by taking the ratio (m by m = 0)
which shows that the mean ± standard deviation estimate of the posterior distribution for θ is
In Bayesian inference, the gamma distribution is the conjugate prior to many likelihood distributions: the Poisson, exponential, normal (with known mean), Pareto, gamma with known shape σ, inverse gamma with known shape parameter, and Gompertz with known scale parameter.
The gamma distribution's conjugate prior is: [28]
where Z is the normalizing constant with no closed-form solution. The posterior distribution can be found by updating the parameters as follows:
where n is the number of observations, and xi is the i-th observation.
Consider a sequence of events, with the waiting time for each event being an exponential distribution with rate λ. Then the waiting time for the n-th event to occur is the gamma distribution with integer shape . This construction of the gamma distribution allows it to model a wide variety of phenomena where several sub-events, each taking time with exponential distribution, must happen in sequence for a major event to occur. [29] Examples include the waiting time of cell-division events, [30] number of compensatory mutations for a given mutation, [31] waiting time until a repair is necessary for a hydraulic system, [32] and so on.
In biophysics, the dwell time between steps of a molecular motor like ATP synthase is nearly exponential at constant ATP concentration, revealing that each step of the motor takes a single ATP hydrolysis. If there were n ATP hydrolysis events, then it would be a gamma distribution with degree n. [33]
The gamma distribution has been used to model the size of insurance claims [34] and rainfalls. [35] This means that aggregate insurance claims and the amount of rainfall accumulated in a reservoir are modelled by a gamma process – much like the exponential distribution generates a Poisson process.
The gamma distribution is also used to model errors in multi-level Poisson regression models because a mixture of Poisson distributions with gamma-distributed rates has a known closed form distribution, called negative binomial.
In wireless communication, the gamma distribution is used to model the multi-path fading of signal power;[ citation needed ] see also Rayleigh distribution and Rician distribution.
In oncology, the age distribution of cancer incidence often follows the gamma distribution, wherein the shape and scale parameters predict, respectively, the number of driver events and the time interval between them. [36] [37]
In neuroscience, the gamma distribution is often used to describe the distribution of inter-spike intervals. [38] [39]
In bacterial gene expression, the copy number of a constitutively expressed protein often follows the gamma distribution, where the scale and shape parameter are, respectively, the mean number of bursts per cell cycle and the mean number of protein molecules produced by a single mRNA during its lifetime. [40]
In genomics, the gamma distribution was applied in peak calling step (i.e., in recognition of signal) in ChIP-chip [41] and ChIP-seq [42] data analysis.
In Bayesian statistics, the gamma distribution is widely used as a conjugate prior. It is the conjugate prior for the precision (i.e. inverse of the variance) of a normal distribution. It is also the conjugate prior for the exponential distribution.
In phylogenetics, the gamma distribution is the most commonly used approach to model among-sites rate variation [43] when maximum likelihood, Bayesian, or distance matrix methods are used to estimate phylogenetic trees. Phylogenetic analyzes that use the gamma distribution to model rate variation estimate a single parameter from the data because they limit consideration to distributions where α = λ. This parameterization means that the mean of this distribution is 1 and the variance is 1/α. Maximum likelihood and Bayesian methods typically use a discrete approximation to the continuous gamma distribution. [44] [45]
Given the scaling property above, it is enough to generate gamma variables with θ = 1, as we can later convert to any value of λ with a simple division.
Suppose we wish to generate random variables from Gamma(n + δ, 1), where n is a non-negative integer and 0 < δ < 1. Using the fact that a Gamma(1, 1) distribution is the same as an Exp(1) distribution, and noting the method of generating exponential variables, we conclude that if U is uniformly distributed on (0, 1], then −ln U is distributed Gamma(1, 1) (i.e. inverse transform sampling). Now, using the "α-addition" property of gamma distribution, we expand this result:
where Uk are all uniformly distributed on (0, 1] and independent. All that is left now is to generate a variable distributed as Gamma(δ, 1) for 0 < δ < 1 and apply the "α-addition" property once more. This is the most difficult part.
Random generation of gamma variates is discussed in detail by Devroye, [46] : 401–428 noting that none are uniformly fast for all shape parameters. For small values of the shape parameter, the algorithms are often not valid. [46] : 406 For arbitrary values of the shape parameter, one can apply the Ahrens and Dieter [47] modified acceptance-rejection method Algorithm GD (shape α ≥ 1), or transformation method [48] when 0 < α < 1. Also see Cheng and Feast Algorithm GKM 3 [49] or Marsaglia's squeeze method. [50]
The following is a version of the Ahrens-Dieter acceptance–rejection method: [47]
A summary of this is where is the integer part of α, ξ is generated via the algorithm above with δ = {α} (the fractional part of α) and the Uk are all independent.
While the above approach is technically correct, Devroye notes that it is linear in the value of α and generally is not a good choice. Instead, he recommends using either rejection-based or table-based methods, depending on context. [46] : 401–428
For example, Marsaglia's simple transformation-rejection method relying on one normal variate X and one uniform variate U: [25]
With generates a gamma distributed random number in time that is approximately constant with &alpha. The acceptance rate does depend on α, with an acceptance rate of 0.95, 0.98, and 0.99 for α = 1, 2, and 4. For α < 1, one can use to boost k to be usable with this method.
In Matlab numbers can be generated using the function gamrnd(), which uses the α, θ representation.
In probability theory and statistics, the exponential distribution or negative exponential distribution is the probability distribution of the distance between events in a Poisson point process, i.e., a process in which events occur continuously and independently at a constant average rate; the distance parameter could be any meaningful mono-dimensional measure of the process, such as time between production errors, or length along a roll of fabric in the weaving manufacturing process. It is a particular case of the gamma distribution. It is the continuous analogue of the geometric distribution, and it has the key property of being memoryless. In addition to being used for the analysis of Poisson point processes it is found in various other contexts.
In probability theory and statistics, the chi-squared distribution with degrees of freedom is the distribution of a sum of the squares of independent standard normal random variables.
In probability theory and statistics, the Weibull distribution is a continuous probability distribution. It models a broad range of random variables, largely in the nature of a time to failure or time between events. Examples are maximum one-day rainfalls and the time a user spends on a web page.
In probability theory and statistics, the beta distribution is a family of continuous probability distributions defined on the interval [0, 1] or in terms of two positive parameters, denoted by alpha (α) and beta (β), that appear as exponents of the variable and its complement to 1, respectively, and control the shape of the distribution.
In probability and statistics, an exponential family is a parametric set of probability distributions of a certain form, specified below. This special form is chosen for mathematical convenience, including the enabling of the user to calculate expectations, covariances using differentiation based on some useful algebraic properties, as well as for generality, as exponential families are in a sense very natural sets of distributions to consider. The term exponential class is sometimes used in place of "exponential family", or the older term Koopman–Darmois family. Sometimes loosely referred to as "the" exponential family, this class of distributions is distinct because they all possess a variety of desirable properties, most importantly the existence of a sufficient statistic.
In probability theory, a distribution is said to be stable if a linear combination of two independent random variables with this distribution has the same distribution, up to location and scale parameters. A random variable is said to be stable if its distribution is stable. The stable distribution family is also sometimes referred to as the Lévy alpha-stable distribution, after Paul Lévy, the first mathematician to have studied it.
Variational Bayesian methods are a family of techniques for approximating intractable integrals arising in Bayesian inference and machine learning. They are typically used in complex statistical models consisting of observed variables as well as unknown parameters and latent variables, with various sorts of relationships among the three types of random variables, as might be described by a graphical model. As typical in Bayesian inference, the parameters and latent variables are grouped together as "unobserved variables". Variational Bayesian methods are primarily used for two purposes:
In probability theory and statistics, the inverse gamma distribution is a two-parameter family of continuous probability distributions on the positive real line, which is the distribution of the reciprocal of a variable distributed according to the gamma distribution.
In statistics and information theory, a maximum entropy probability distribution has entropy that is at least as great as that of all other members of a specified class of probability distributions. According to the principle of maximum entropy, if nothing is known about a distribution except that it belongs to a certain class, then the distribution with the largest entropy should be chosen as the least-informative default. The motivation is twofold: first, maximizing entropy minimizes the amount of prior information built into the distribution; second, many physical systems tend to move towards maximal entropy configurations over time.
In probability theory and statistics, the beta prime distribution is an absolutely continuous probability distribution. If has a beta distribution, then the odds has a beta prime distribution.
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In probability and statistics, the Tweedie distributions are a family of probability distributions which include the purely continuous normal, gamma and inverse Gaussian distributions, the purely discrete scaled Poisson distribution, and the class of compound Poisson–gamma distributions which have positive mass at zero, but are otherwise continuous. Tweedie distributions are a special case of exponential dispersion models and are often used as distributions for generalized linear models.
In probability theory and statistics, the normal-inverse-gamma distribution is a four-parameter family of multivariate continuous probability distributions. It is the conjugate prior of a normal distribution with unknown mean and variance.
Financial models with long-tailed distributions and volatility clustering have been introduced to overcome problems with the realism of classical financial models. These classical models of financial time series typically assume homoskedasticity and normality and as such cannot explain stylized phenomena such as skewness, heavy tails, and volatility clustering of the empirical asset returns in finance. In 1963, Benoit Mandelbrot first used the stable distribution to model the empirical distributions which have the skewness and heavy-tail property. Since -stable distributions have infinite -th moments for all , the tempered stable processes have been proposed for overcoming this limitation of the stable distribution.
In probability theory and statistics, the Poisson distribution is a discrete probability distribution that expresses the probability of a given number of events occurring in a fixed interval of time if these events occur with a known constant mean rate and independently of the time since the last event. It can also be used for the number of events in other types of intervals than time, and in dimension greater than 1.
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In statistics and probability theory, the nonparametric skew is a statistic occasionally used with random variables that take real values. It is a measure of the skewness of a random variable's distribution—that is, the distribution's tendency to "lean" to one side or the other of the mean. Its calculation does not require any knowledge of the form of the underlying distribution—hence the name nonparametric. It has some desirable properties: it is zero for any symmetric distribution; it is unaffected by a scale shift; and it reveals either left- or right-skewness equally well. In some statistical samples it has been shown to be less powerful than the usual measures of skewness in detecting departures of the population from normality.
In statistics, the variance function is a smooth function that depicts the variance of a random quantity as a function of its mean. The variance function is a measure of heteroscedasticity and plays a large role in many settings of statistical modelling. It is a main ingredient in the generalized linear model framework and a tool used in non-parametric regression, semiparametric regression and functional data analysis. In parametric modeling, variance functions take on a parametric form and explicitly describe the relationship between the variance and the mean of a random quantity. In a non-parametric setting, the variance function is assumed to be a smooth function.
In probability theory, the stable count distribution is the conjugate prior of a one-sided stable distribution. This distribution was discovered by Stephen Lihn in his 2017 study of daily distributions of the S&P 500 and the VIX. The stable distribution family is also sometimes referred to as the Lévy alpha-stable distribution, after Paul Lévy, the first mathematician to have studied it.
In theoretical physics, more specifically in quantum field theory and supersymmetry, supersymmetric Yang–Mills, also known as super Yang–Mills and abbreviated to SYM, is a supersymmetric generalization of Yang–Mills theory, which is a gauge theory that plays an important part in the mathematical formulation of forces in particle physics. It is a special case of 4D N = 1 global supersymmetry.
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