Hepacivirus

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Hepacivirus
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Hepacivirus structure and genome
Virus classification OOjs UI icon edit-ltr.svg
(unranked): Virus
Realm: Riboviria
Kingdom: Orthornavirae
Phylum: Kitrinoviricota
Class: Flasuviricetes
Order: Amarillovirales
Family: Flaviviridae
Genus:Hepacivirus
Synonyms
  • Hepatitis C-like viruses [1]
  • Hepatitis virus C group [2]

Hepacivirus is a genus of positive-strand RNA viruses in the family Flaviviridae . [3] The hepatitis C virus (HCV), in species Hepacivirus hominis, infects humans and is associated with hepatitis and hepatocellular carcinoma. [3] [4] There are fourteen species in the genus which infect a range of other vertebrate. [3]

Contents

History

Hepatitis C virus (HCV), which is the causative agent of hepatitis C in humans, and a member of the species Hepacivirus C, was discovered in 1989. [5] Eight genotypes (1–8) and eighty-six subtypes (1a, 1b etc.) of hepatitis C virus have been named. [6]

GBV-B virus (also known as GB virus B) discovered in 1995 is capable of infecting New World monkeys, in particular tamarins. Like HCV it is transmitted by the blood-borne route and similar to HCV it is associated with the viral hepatitis. However GBV-B has never been identified in wild animals and its natural host is not known. [5]

Structure

Viruses in the genus Hepacivirus are enveloped and have spherical icosahedral-like geometries with pseudo T=3 symmetry. The virus particle diameter is around 50 nm. Genomes are linear, non-segmented, and around 10,000 nucleotides in length. [3] [4]

Life cycle

Entry into the host cell is achieved by attachment of the viral envelope protein E to host receptors, which mediates clathrin-mediated endocytosis. Replication follows the positive-strand RNA virus replication model. Positive strand RNA virus transcription is the method of transcription. Translation takes place by viral initiation. Humans and other vertebrate serve as the natural host. Transmission routes are sexual, blood, and contact. [3] [4]

Taxonomy

Phylogenetic tree of hepaciviruses and pegiviruses with their host 41598 2019 50580 Fig3 HTML.webp
Phylogenetic tree of hepaciviruses and pegiviruses with their host

The genus contains the following species, listed by scientific name and followed by viruses that belong to the species: [7] [3] [8]

Additional information

Additional hepaciviruses have been described from bats, rodents including bank voles, horses, and dogs. [9] [10] [11] Rodent hepacivirus is found in the deer mouse ( Peromyscus maniculatus ). [5] A virus related to hepaciviruses is found in bamboo rat ( Rhizomys pruinosus ). [12] A virus related to hepaciviruses infects the long-tailed ground squirrel Spermophilus undulatus. [13]

Cattle are a host for viruses of the species Hepacivirus bovis. [14] [15] The viruses most closely related to Hepacivirus hominis are the equine hepaciviruses of the species Hepacivirus equi. [16] There are at least two subtypes of equine hepacivirus. [17] Hepacivirus A infecting horses has also been found in donkeys. [18]

A virus related to the hepaciviruses has been isolated from bald eagles ( Haliaeetus leucocephalus ). [19] Another unclassified virus in this taxon is duck hepacivirus-like virus. [20] A virus related to hepaciviruses has been isolated from the graceful catshark ( Proscyllium habereri ). [21] The virus – Jogalong virus – has been described that appears to belong to another species in this genus. [22]

References

  1. ↑ Pringle, C. R. (1996). "Virus Taxonomy 1996 - A Bulletin from the Xth International Congress of Virology in Jerusalem" (PDF). Archives of Virology. 141 (11): 2251–6. doi:10.1007/BF01718231. ISSN   1432-8798. OCLC   76349762. PMC   7086844 . PMID   8992952 . Retrieved 13 March 2019. To name the genus comprising the hepatitis C-like viruses as the genus Hepacivirus.
  2. ↑ 1ICTV 6th Report Murphy, F. A., Fauquet, C. M., Bishop, D. H. L., Ghabrial, S. A., Jarvis, A. W. Martelli, G. P. Mayo, M. A. & Summers, M. D.(eds)(1995). Virus Taxonomy. Sixthreport of the International Committee on Taxonomy of Viruses. Archives of Virology Supplement 10, p. 424 https://ictv.global/ictv/proposals/ICTV%206th%20Report.pdf Archived 2 March 2023 at the Wayback Machine
  3. 1 2 3 4 5 6 "Flaviviridae". International Committee on Taxonomy of Viruses (ICTV).
  4. 1 2 3 "Viral Zone". ExPASy. Retrieved 15 June 2015.
  5. 1 2 3 Stapleton, J. T; Foung, S; Muerhoff, A. S; Bukh, J; Simmonds, P (2010). "The GB viruses: A review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae". Journal of General Virology. 92 (2): 233–46. doi:10.1099/vir.0.027490-0. PMC   3081076 . PMID   21084497.
  6. ↑ Hostager R, Ragonnet-Cronin M, Murrell B, Hedskog C, Osinusi A, Susser S, Sarrazin C, Svarovskaia E, Wertheim JO (9 October 2019). "Hepatitis C virus genotype 1 and 2 recombinant genomes and the phylogeographic history of the 2k/1b lineage". Virus Evol. 5 (2) vez041. doi:10.1093/ve/vez041. PMC   6785677 . PMID   31616569.
  7. ↑ Smith, Donald B; Becher, Paul; Bukh, Jens; Gould, Ernest A; Meyers, Gregor; Monath, Thomas; Muerhoff, A Scott; Pletnev, Alexander; Rico-Hesse, Rebecca; Stapleton, Jack T; Simmonds, Peter (2016). "Proposed update to the taxonomy of the genera Hepacivirus and Pegivirus within the Flaviviridae family". Journal of General Virology. 97 (11): 2894–2907. doi:10.1099/jgv.0.000612. PMC   5770844 . PMID   27692039.
  8. ↑ "Virus Taxonomy: 2024 Release". International Committee on Taxonomy of Viruses. Retrieved 12 March 2025.
  9. ↑ Kapoor, A; Simmonds, P; Scheel, T. K. H; Hjelle, B; Cullen, J. M; Burbelo, P. D; Chauhan, L. V; Duraisamy, R; Sanchez Leon, M; Jain, K; Vandegrift, K. J; Calisher, C. H; Rice, C. M; Lipkin, W. I (2013). "Identification of Rodent Homologs of Hepatitis C Virus and Pegiviruses". mBio. 4 (2) e00216–13. doi: 10.1128/mBio.00216-13 . PMC   3622934 . PMID   23572554.
  10. ↑ Drexler, Jan Felix; Corman, Victor Max; Müller, Marcel Alexander; Lukashev, Alexander N; Gmyl, Anatoly; Coutard, Bruno; Adam, Alexander; Ritz, Daniel; Leijten, Lonneke M; Van Riel, Debby; Kallies, Rene; Klose, Stefan M; Gloza-Rausch, Florian; Binger, Tabea; Annan, Augustina; Adu-Sarkodie, Yaw; Oppong, Samuel; Bourgarel, Mathieu; Rupp, Daniel; Hoffmann, Bernd; Schlegel, Mathias; Kümmerer, Beate M; Krüger, Detlev H; Schmidt-Chanasit, Jonas; Setién, Alvaro Aguilar; Cottontail, Veronika M; Hemachudha, Thiravat; Wacharapluesadee, Supaporn; Osterrieder, Klaus; et al. (2013). "Evidence for Novel Hepaciviruses in Rodents". PLOS Pathogens. 9 (6) e1003438. doi: 10.1371/journal.ppat.1003438 . PMC   3688547 . PMID   23818848.
  11. ↑ Lauck, M; Sibley, S. D; Lara, J; Purdy, M. A; Khudyakov, Y; Hyeroba, D; Tumukunde, A; Weny, G; Switzer, W. M; Chapman, C. A; Hughes, A. L; Friedrich, T. C; O'Connor, D. H; Goldberg, T. L (2013). "A Novel Hepacivirus with an Unusually Long and Intrinsically Disordered NS5A Protein in a Wild Old World Primate". Journal of Virology. 87 (16): 8971–81. doi:10.1128/JVI.00888-13. PMC   3754081 . PMID   23740998.
  12. ↑ Van Nguyen, Dung; Van Nguyen, Cuong; Bonsall, David; Ngo, Tue; Carrique-Mas, Juan; Pham, Anh; Bryant, Juliet; Thwaites, Guy; Baker, Stephen; Woolhouse, Mark; Simmonds, Peter (2018). "Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam". Viruses. 10 (3): 102. doi: 10.3390/v10030102 . PMC   5869495 . PMID   29495551.
  13. ↑ Li LL, Liu MM, Shen S, Zhang YJ, Xu YL, Deng HY, Deng F, Duan ZJ (2019) Detection and characterization of a novel hepacivirus in long-tailed ground squirrels (Spermophilus undulatus) in China. Arch Virol
  14. ↑ Corman, Victor Max; Grundhoff, Adam; Baechlein, Christine; Fischer, Nicole; Gmyl, Anatoly; Wollny, Robert; Dei, Dickson; Ritz, Daniel; Binger, Tabea; Adankwah, Ernest; Marfo, Kwadwo Sarfo; Annison, Lawrence; Annan, Augustina; Adu-Sarkodie, Yaw; Oppong, Samuel; Becher, Paul; Drosten, Christian; Drexler, Jan Felix (2015). "Highly Divergent Hepaciviruses from African Cattle". Journal of Virology. 89 (11): 5876–82. doi:10.1128/JVI.00393-15. PMC   4442428 . PMID   25787289.
  15. ↑ Baechlein, Christine; Fischer, Nicole; Grundhoff, Adam; Alawi, Malik; Indenbirken, Daniela; Postel, Alexander; Baron, Anna Lena; Offinger, Jennifer; Becker, Kathrin; Beineke, Andreas; Rehage, Juergen; Becher, Paul (2015). "Identification of a Novel Hepacivirus in Domestic Cattle from Germany". Journal of Virology. 89 (14): 7007–15. doi:10.1128/JVI.00534-15. PMC   4473572 . PMID   25926652.
  16. ↑ Thézé, Julien; Lowes, Sophia; Parker, Joe; Pybus, Oliver G (2015). "Evolutionary and Phylogenetic Analysis of the Hepaciviruses and Pegiviruses". Genome Biology and Evolution. 7 (11): 2996–3008. doi:10.1093/gbe/evv202. PMC   5635594 . PMID   26494702.
  17. ↑ Pronost, S; Hue, E; Fortier, C; Foursin, M; Fortier, G; Desbrosse, F; Rey, F. A; Pitel, P.-H; Richard, E; Saunier, B (2017). "Prevalence of Equine Hepacivirus Infections in France and Evidence for Two Viral Subtypes Circulating Worldwide". Transboundary and Emerging Diseases. 64 (6): 1884–1897. doi: 10.1111/tbed.12587 . PMID   27882682. S2CID   19064165.
  18. ↑ Walter S, Rasche A, Moreira-Soto A, Pfaender S, Bletsa M, Corman VM, Aguilar-Setien A, García-Lacy F, Hans A, Todt D, Schuler G, Shnaiderman-Torban A, Steinman A, Roncoroni C, Veneziano V, Rusenova N12, Sandev N12, Rusenov A, Zapryanova D, García-Bocanegra I, Jores J, Carluccio A, Veronesi MC, Cavalleri JMV, Drosten C, Lemey P, Steinmann E, Drexler JF (2016) Differential infection patterns and recent evolutionary origins of Equine Hepaciviruses in donkeys. J Virol 91(1)
  19. ↑ Goldberg TL, Sibley SD, Pinkerton ME, Dunn CD, Long LJ, White LC, Strom SM (2019) Multidecade mortality and a homolog of Hepatitis C Virus in bald eagles (Haliaeetus leucocephalus), the national bird of the USA. Sci Rep 9(1):14953
  20. ↑ Chu L, Jin M, Feng C, Wang X, Zhang D (2019) A highly divergent hepacivirus-like flavivirus in domestic ducks. J Gen Virol
  21. ↑ Shi, Mang; Lin, Xian-Dan; Vasilakis, Nikos; Tian, Jun-Hua; Li, Ci-Xiu; Chen, Liang-Jun; Eastwood, Gillian; Diao, Xiu-Nian; Chen, Ming-Hui; Chen, Xiao; Qin, Xin-Cheng; Widen, Steven G; Wood, Thomas G; Tesh, Robert B; Xu, Jianguo; Holmes, Edward C; Zhang, Yong-Zhen (2016). "Divergent Viruses Discovered in Arthropods and Vertebrates Revise the Evolutionary History of the Flaviviridae and Related Viruses". Journal of Virology. 90 (2): 659–69. doi:10.1128/JVI.02036-15. PMC   4702705 . PMID   26491167.
  22. ↑ Williams SH, Levy A, Yates RA, Somaweera N, Neville PJ, Nicholson J, Lindsay MDA, Mackenzie JS, Jain K, Imrie A, Smith DW, Lipkin WI (2020) Discovery of Jogalong virus, a novel hepacivirus identified in a Culex annulirostris (Skuse) mosquito from the Kimberley region of Western Australia. PLoS One 15(1):e0227114
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