Dictyoglomus thermophilum

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Dictyoglomus
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Scientific classification
Domain:
Phylum:
Dictyoglomota

Patel 2021 [1]
Class:
Dictyoglomia

Patel 2012
Order:
Dictyoglomales

Patel 2012
Family:
Dictyoglomaceae

Patel 2012
Genus:
Dictyoglomus

Saiki et al. 1985
Type species
Dictyoglomus thermophilum
Saiki et al. 1985
Species [2] [3]
  • D. thermophilumSaiki et al. 1985
  • D. turgidumcorrig. Svetlichny and Svetlichnayá 1995
Synonyms
  • Dictyoglomota:
    • "Dictyoglomaeota" Oren et al. 2015
    • "Dictyoglomi" Patel 2010
    • "Dictyoglomota" Whitman et al. 2018

Dictyoglomus is a genus of bacterium, [4] given its own Phylum, called the Dictyoglomi. This organism is extremely thermophilic , meaning it thrives at extremely high temperatures. It is chemoorganotrophic , meaning it derives energy by metabolizing organic molecules. This organism is of interest because it elaborates an enzyme, xylanase, which digests xylan, a heteropolymer of the pentose sugar xylose. By pretreating wood pulp with this enzyme, paper manufacturers can achieve comparable levels of whiteness with much less chlorine bleach.

Contents

It has been described as Gram-negative, with a triple-layered wall. [5]

Related Research Articles

<span class="mw-page-title-main">Thermophile</span> Organism that thrives at relatively high temperatures

A thermophile is an organism—a type of extremophile—that thrives at relatively high temperatures, between 41 and 122 °C. Many thermophiles are archaea, though they can be bacteria or fungi. Thermophilic eubacteria are suggested to have been among the earliest bacteria.

<span class="mw-page-title-main">Thermoproteota</span> Phylum of archaea

The Thermoproteota are archaea that have been classified as a phylum of the Archaea domain. Initially, the Thermoproteota were thought to be sulfur-dependent extremophiles but recent studies have identified characteristic Thermoproteota environmental rRNA indicating the organisms may be the most abundant archaea in the marine environment. Originally, they were separated from the other archaea based on rRNA sequences; other physiological features, such as lack of histones, have supported this division, although some crenarchaea were found to have histones. Until recently all cultured Thermoproteota had been thermophilic or hyperthermophilic organisms, some of which have the ability to grow at up to 113 °C. These organisms stain Gram negative and are morphologically diverse, having rod, cocci, filamentous and oddly-shaped cells.

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.

Endo-1,4-β-xylanase is any of a class of enzymes that degrade the linear polysaccharide xylan into xylose, thus breaking down hemicellulose, one of the major components of plant cell walls:

<span class="mw-page-title-main">Thermoplasmata</span> Class of archaea

In taxonomy, the Thermoplasmata are a class of the Euryarchaeota.

<i>Thermotoga</i> Genus of bacteria

Thermotoga is a genus of the phylum Thermotogota. Members of Thermotoga are hyperthermophilic bacteria whose cell is wrapped in a unique sheath-like outer membrane, called a "toga".

Thermus thermophilus is a Gram-negative bacterium used in a range of biotechnological applications, including as a model organism for genetic manipulation, structural genomics, and systems biology. The bacterium is extremely thermophilic, with an optimal growth temperature of about 65 °C (149 °F). Thermus thermophilus was originally isolated from a thermal vent within a hot spring in Izu, Japan by Tairo Oshima and Kazutomo Imahori. The organism has also been found to be important in the degradation of organic materials in the thermogenic phase of composting. T. thermophilus is classified into several strains, of which HB8 and HB27 are the most commonly used in laboratory environments. Genome analyses of these strains were independently completed in 2004.

<i>Ferroplasma</i> Genus of archaea

Ferroplasma is a genus of Archaea that belong to the family Ferroplasmaceae. Members of the Ferroplasma are typically acidophillic, pleomorphic, irregularly shaped cocci.

In taxonomy, Thermoproteus is a genus of the Thermoproteaceae. These prokaryotes are thermophilic sulphur-dependent organisms related to the genera Sulfolobus, Pyrodictium and Desulfurococcus. They are hydrogen-sulphur autotrophs and can grow at temperatures of up to 95 °C.

Methanococcus is a genus of coccoid methanogens of the family Methanococcaceae. They are all mesophiles, except the thermophilic M. thermolithotrophicus and the hyperthermophilic M. jannaschii. The latter was discovered at the base of a “white smoker” chimney at 21°N on the East Pacific Rise and it was the first archaeal genome to be completely sequenced, revealing many novel and eukaryote-like elements.

<span class="mw-page-title-main">Methanosarcinaceae</span> Family of archaea

In taxonomy, the Methanosarcinaceae are a family of the Methanosarcinales.

In taxonomy, Thermococcus is a genus of thermophilic Archaea in the family the Thermococcaceae.

In taxonomy, Staphylothermus is a genus of the Desulfurococcaceae.[1]

Chloracidobacterium is a genus of the Acidobacteriota. It is currently assigned to the family Acidobacteriaceae, but phylogenetic evidence suggests that it belongs in Blastocatellia.

Armatimonadota is a phylum of gram-negative bacteria.

Caldicellulosiruptor bescii is a species of thermophilic, anaerobic cellulolytic bacteria. It was isolated from a geothermally heated freshwater pool in the Valley of Geysers on the Kamchatka Peninsula in Russia in 1990. The species was originally named Anaerocellum thermophilum, but reclassified in 2010, based on genomic data.

Myceliophthora thermophila is an ascomycete fungus that grows optimally at 45–50 °C (113–122 °F). It efficiently degrades cellulose and is of interest in the production of biofuels. The genome has recently been sequenced, revealing the full range of enzymes this organism uses for the degradation of plant cell wall material.

Thermomyces lanuginosus is a species of thermophilic fungus that belongs to Thermomyces, a genus of hemicellulose degraders. It is classified as a deuteromycete and no sexual form has ever been observed. It is the dominant fungus of compost heaps, due to its ability to withstand high temperatures and use complex carbon sources for energy. As the temperature of compost heaps rises and the availability of simple carbon sources decreases, it is able to out compete pioneer microflora. It plays an important role in breaking down the hemicelluloses found in plant biomass due to the many hydrolytic enzymes that it produces, such as lipolase, amylase, xylanase, phytase, and chitinase. These enzymes have chemical, environmental, and industrial applications due to their hydrolytic properties. They are used in the food, petroleum, pulp and paper, and animal feed industries, among others. A few rare cases of endocarditis due to T. lanuginosus have been reported in humans.

Cellulosimicrobium cellulans is a Gram-positive bacterium from the genus of Cellulosimicrobium. Cellulosimicrobium cellulans can cause rare opportunistic infections. The strain EB-8-4 of this species can be used for stereoselective allylic hydroxylation of D-limonene to (+)-trans-carveol.

References

  1. Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi: 10.1099/ijsem.0.005056 . PMID   34694987.
  2. J.P. Euzéby. "Dictyoglomi". List of Prokaryotic names with Standing in Nomenclature. Archived from the original on 2011-06-13. Retrieved 2011-06-05.
  3. See the NCBI webpage on Dictyglomi. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information . Retrieved 2011-06-05.
  4. Morris DD, Gibbs MD, Chin CW, et al. (May 1998). "Cloning of the xynB gene from Dictyoglomus thermophilum Rt46B.1 and action of the gene product on kraft pulp". Appl. Environ. Microbiol. 64 (5): 1759–65. PMC   106227 . PMID   9572948.
  5. Kristjansson, Jakob K. (1992). Thermophilic bacteria. Boca Raton: CRC Press. p. 133. ISBN   0-8493-5239-8.

Further reading