Siphoviridae was a family of double-stranded DNA viruses in the order Caudovirales. The family Siphoviridae and order Caudoviraleshave now been abolished, with the term siphovirus now used to refer to the morphology of viruses in this former family. Bacteria and archaea serve as natural hosts. There was 1,166 species in this former family, assigned to 366 genera and 22 subfamilies. The characteristic structural features of this family are a nonenveloped head and noncontractile tail.
A satellite is a subviral agent that depends on the coinfection of a host cell with a helper virus for its replication. Satellites can be divided into two major classes: satellite viruses and satellite nucleic acids. Satellite viruses, which are most commonly associated with plants, are also found in mammals, arthropods, and bacteria. They encode structural proteins to enclose their genetic material, which are therefore distinct from the structural proteins of their helper viruses. Satellite nucleic acids, in contrast, do not encode their own structural proteins, but instead are encapsulated by proteins encoded by their helper viruses. The genomes of satellites range upward from 359 nucleotides in length for satellite tobacco ringspot virus RNA (STobRV).
The potato spindle tuber viroid (PSTVd) was the first viroid to be identified. PSTVd is a small, single stranded circular RNA molecule closely related to the chrysanthemum stunt viroid. Present within the viroidal RNA is the Pospiviroid RY motif stem loop common to its genus. The natural hosts are potatoes and tomatoes. All potatoes and tomatoes are susceptible to PSTVd and there is no form of natural resistance. Natural infections have also been seen in avocados and infections in other solanaceous crops have been induced in the laboratory. Until 2017 PSTVd was thought to be unable to infect Solanum sisymbriifolium. Then in May seeds exported by a Dutch company were noticed to be infected. These seeds were shipped from the company, but had been originally bred to their specifications in two Asian countries. Pstv also causes Tomato bunchy top and is seed transmitted in tomato.
The Pospiviroidae are a incertae sedis family of ssRNA viroids with 5 genera and 39 species, including the first viroid to be discovered, PSTVd, which is part of genus Pospiviroid. Their secondary structure is key to their biological activity. The classification of this family is based on differences in the conserved central region sequence. Pospiviroidae replication occurs in an asymmetric fashion via host cell RNA polymerase, RNase, and RNA ligase. Its hosts are plants, specifically dicotyledons and some monocotyledons.
Tobamovirus is a genus of positive-strand RNA viruses in the family Virgaviridae. Many plants, including tobacco, potato, tomato, and squash, serve as natural hosts. Diseases associated with this genus include: necrotic lesions on leaves. The name Tobamovirus comes from the host and symptoms of the first virus discovered.
Potyvirus is a genus of positive-strand RNA viruses in the family Potyviridae. Plants serve as natural hosts. Like begomoviruses, members of this genus may cause significant losses in agricultural, pastoral, horticultural, and ornamental crops. More than 200 species of aphids spread potyviruses, and most are from the subfamily Aphidinae. The genus contains 190 species and potyviruses account for about thirty percent of all currently known plant viruses.
Begomovirus is a genus of viruses, in the family Geminiviridae. They are plant viruses that as a group have a very wide host range, infecting dicotyledonous plants. Worldwide they are responsible for a considerable amount of economic damage to many important crops such as tomatoes, beans, squash, cassava and cotton. There are 445 species in this genus.
Nepovirus is a genus of viruses in the order Picornavirales, in the family Secoviridae, in the subfamily Comovirinae. Plants serve as natural hosts. There are 40 species in this genus. Nepoviruses, unlike the other two genera in the subfamily Comovirinae, are transmitted by nematodes.
Ilarvirus is a genus of positive-strand RNA viruses in the family Bromoviridae. Plants serve as natural hosts. There are 22 species in this genus.
Orthotospovirus is a genus of negative-strand RNA viruses, in the family Tospoviridae of the order Bunyavirales, which infects plants. Tospoviruses take their name from the species Tomato spotted wilt orthotospovirus (TSWV) which was discovered in Australia in 1919. TSWV remained the only known member of the family until the early 1990s when genetic characterisation of plant viruses became more common. There are now at least twenty species in the genus with more being discovered on a regular basis. Member viruses infect over eight hundred plant species from 82 different families.
Carlavirus, formerly known as the "Carnation latent virus group", is a genus of viruses in the order Tymovirales, in the family Betaflexiviridae. Plants serve as natural hosts. There are 53 species in this genus. Diseases associated with this genus include: mosaic and ringspot symptoms.
Emaravirus is a genus of negative-strand RNA viruses which infect plants. The plant virus group is the sole genus in the family Fimoviridae. The genus has 21 species.
Badnavirus is a genus of viruses, in the family Caulimoviridae order Ortervirales. Plants serve as natural hosts. There are 67 species in this genus. Diseases associated with this genus include: CSSV: leaf chlorosis, root necrosis, red vein banding in young leaves, small mottled pods, and stem/root swelling followed by die-back. Infection decreases yield by 25% within one year, 50% within two years and usually kills trees within 3–4 years.
Mastrevirus is a genus of ssDNA viruses, in the family Geminiviridae. Mostly monocotyledonous plants serve as natural hosts. They are vectored by planthoppers. There are 45 species in this genus. Diseases associated with this genus include: maize streak virus: maize streak disease (MSD).
Polerovirus is a genus of viruses, in the family Solemoviridae. Plants serve as natural hosts. There are 26 species in this genus. Diseases associated with this genus include: PLRV causes prominent rolling of the leaves of potato and a stiff upright habit of the plants; necrosis of the phloem and accumulation of carbohydrates in the leaves.
Tymovirus is a genus of viruses in the order Tymovirales, in the family Tymoviridae. Plants serve as natural hosts. There are 28 species in this genus.
Pepper leaf curl virus(PepLCV) is a DNA virus from the genus Begomovirus and the family Geminiviridae. PepLCV causes severe disease especially in pepper (Capsicum spp.). It can be found in tropical and subtropical regions such as Thailand and India, but has also been detected in countries such as the United States and Nigeria. This virus is transmitted by an insect vector from the family Aleyrodidae and order Hemiptera, the whitefly Bemisia tabaci. The primary host for PepLCV are several Capsicum spp.. PepLCV has been responsible for several epidemics and causes severe economic losses. It is the focus of research trying to understand the genetic basis of resistance. Currently, a source of resistance to the virus has been identified in the Bhut Jolokia pepper.
Tomato yellow leaf curl China virus (TYLCCNV) is a virus which contains 25 isolates. It infects plants as different as tobacco and tomato, as well as genetically modified plants. Petunias can be infected, but show no symptoms. The microbiology of the virus has been studied in the Chinese province of Yunnan. Tomato yellow leaf curl China virus belongs to the genus Begomovirus, which also contains the tomato leaf curl China virus.
Tomato leaf curl China virus is a virus that infects tomato plants in China and was first described in 2011. The virus infects tomatoes in the Chinese province of Guangxi, and it is transmitted by the whitefly. The current EPPO name is TOLCCV, but its original name in the literature was ToLCCNV.
Tolecusatellitidae is a incertae sedis ssDNA/ssDNA(+) family of biological satellites. The family contains two genera and 131 species. This family of viruses depend on the presence of another virus to replicate their genomes, as such they have minimal genomes with very low genomic redundancy.
