Nepovirus | |
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Crystal structure of Grapevine Fanleaf Virus | |
Virus classification | |
(unranked): | Virus |
Realm: | Riboviria |
Kingdom: | Orthornavirae |
Phylum: | Pisuviricota |
Class: | Pisoniviricetes |
Order: | Picornavirales |
Family: | Secoviridae |
Subfamily: | Comovirinae |
Genus: | Nepovirus |
Species | |
Nepovirus is a genus of viruses in the order Picornavirales , in the family Secoviridae , in the subfamily Comovirinae . Plants serve as natural hosts. There are 40 species in this genus. [1] [2] Nepoviruses, unlike the other two genera ( Comovirus and Fabavirus ) in the subfamily Comovirinae , are transmitted by nematodes. [3]
The genus contains the following species: [2]
Viruses in Nepovirus are non-enveloped, with icosahedral geometries, and T=pseudo3 symmetry. The diameter is around 28-30 nm. Genomes are linear and segmented, bipartite, around 23.9kb in length. [1]
Genus | Structure | Symmetry | Capsid | Genomic arrangement | Genomic segmentation |
---|---|---|---|---|---|
Nepovirus | Icosahedral | Pseudo T=3 | Non-enveloped | Linear | Segmented |
Viral replication is cytoplasmic. Entry into the host cell is achieved by penetration into the host cell. Replication follows the positive stranded RNA virus replication model. Positive stranded RNA virus transcription is the method of transcription. The virus exits the host cell by tubule-guided viral movement. Plants serve as the natural host. The virus is transmitted via a vector (nematodes, mite, and thrips). Transmission routes are vector. [1]
Genus | Host details | Tissue tropism | Entry details | Release details | Replication site | Assembly site | Transmission |
---|---|---|---|---|---|---|---|
Nepovirus | Plants | None | Viral movement; mechanical inoculation | Viral movement | Cytoplasm | Cytoplasm | Nematodes; mites; thrips |
Nepoviruses are classified as type IV viruses under the Baltimore classification system, and consequently contain bipartite, linear, single stranded positive sense RNA genomes. The two genome segments are encapsulated separately into two different icosahedral particles. Each of the genome segments produces a different polypeptide, which undergoes a series of steps (i.e. proteolysis, and other post-translational modifications) in order to produce a functional protein. [3]
The first segment (RNA1) is approximately 8,000 nucleotides in length and appears as a single copy in each B type virion. It encodes the proteins that are important in replication and is the first gene to be activated. [3]
The second segment (RNA2) is approximately 4,000–7,000 nucleotides in length and usually appears as a single copy in each M type virion. It encodes the proteins that are important in cell-cell transmission and evasion of cellular defenses. [3]
A satellite is a subviral agent that depends on the coinfection of a host cell with a helper virus for its replication. Satellites can be divided into two major classes: satellite viruses and satellite nucleic acids. Satellite viruses, which are most commonly associated with plants, are also found in mammals, arthropods, and bacteria. They encode structural proteins to enclose their genetic material, which are therefore distinct from the structural proteins of their helper viruses. Satellite nucleic acids, in contrast, do not encode their own structural proteins, but instead are encapsulated by proteins encoded by their helper viruses. The genomes of satellites range upward from 359 nucleotides in length for satellite tobacco ringspot virus RNA (STobRV).
Comovirinae is a subfamily of viruses in the order Picornavirales, in the family Secoviridae; its genera were formerly classified in the family Comoviridae. Plants serve as natural hosts. There are 62 species in this subfamily, assigned to 3 genera.
Tobamovirus is a genus of positive-strand RNA viruses in the family Virgaviridae. Many plants, including tobacco, potato, tomato, and squash, serve as natural hosts. Diseases associated with this genus include: necrotic lesions on leaves. The name Tobamovirus comes from the host and symptoms of the first virus discovered.
Potyvirus is a genus of positive-strand RNA viruses in the family Potyviridae. Plants serve as natural hosts. The genus is named after member virus potato virus Y. Potyviruses account for about thirty percent of the currently known plant viruses. Like begomoviruses, members of this genus may cause significant losses in agricultural, pastoral, horticultural, and ornamental crops. More than 200 species of aphids spread potyviruses, and most are from the subfamily Aphidinae. The genus contains 190 species.
Tombusvirus is a genus of viruses, in the family Tombusviridae. Plants serve as natural hosts. There are 17 species in this genus. Symptoms associated with this genus include mosaic. The name of the genus comes from Tomato bushy stunt virus.
Dianthovirus is a genus of viruses, in the family Tombusviridae. Dianthoviruses are plant viruses. There are three species in this genus. The virus probably has a worldwide distribution, and can be transmitted via nematodes, by mechanical inoculation, by grafting of plants and by contact between infected hosts with previously uninfected host.
Ilarvirus is a genus of positive-strand RNA viruses in the family Bromoviridae. Plants serve as natural hosts. There are 22 species in this genus.
Potexvirus is a genus of pathogenic viruses in the order Tymovirales, in the family Alphaflexiviridae. Plants serve as natural hosts. There are 48 species in this genus, three of which are assigned to a subgenus. Diseases associated with this genus include: mosaic and ringspot symptoms. The genus name comes from POTato virus X).
Carlavirus, formerly known as the "Carnation latent virus group", is a genus of viruses in the order Tymovirales, in the family Betaflexiviridae. Plants serve as natural hosts. There are 53 species in this genus. Diseases associated with this genus include: mosaic and ringspot symptoms.
Trichovirus is a genus of viruses in the order Tymovirales, in the family Betaflexiviridae. Plants, specifically angiosperms such as pome fruits, citrus, and pear, serve as natural hosts for this plant pathogen. There are seven species in this genus.
Secoviridae is a family of viruses in the order Picornavirales. Plants serve as natural hosts. There are 8 genera and 86 species in this family, one of which is unassigned to a genus. The family was created in 2009 with the grouping of families Sequiviridae, now dissolved, and Comoviridae, now subfamily Comovirinae, along with the then unassigned genera Cheravirus, Sadwavirus, and Torradovirus.
Ipomovirus is a genus of positive-strand RNA viruses in the family Potyviridae. Member viruses infect plants and are transmitted by whiteflies. The name of the genus is derived from Ipomoea – the generic name of sweet potato. There are seven species in this genus.
The Blueberry leaf mottle virus (BLMV) is a Nepovirus that was first discovered in Michigan in 1977. It has also appeared in New York, eastern Canada, Bulgaria, Hungary, and Portugal.
Fabavirus is a genus of plant viruses in the order Picornavirales, in the family Secoviridae, in the subfamily Comovirinae. Plants serve as natural hosts. There are seven species in this genus.
Badnavirus is a genus of viruses, in the family Caulimoviridae order Ortervirales. Plants serve as natural hosts. There are 67 species in this genus. Diseases associated with this genus include: CSSV: leaf chlorosis, root necrosis, red vein banding in young leaves, small mottled pods, and stem/root swelling followed by die-back. Infection decreases yield by 25% within one year, 50% within two years and usually kills trees within 3–4 years.
Bromovirus is a genus of viruses, in the family Bromoviridae. Plants serve as natural hosts. There are six species in this genus.
Caulimovirus is a genus of viruses, in the family Caulimoviridae order Ortervirales. Plants serve as natural hosts. There are 12 species in this genus. Diseases associated with this genus include: vein-clearing or banding mosaic.
Comovirus is a genus of viruses in the order Picornavirales, in the family Secoviridae, in the subfamily Comovirinae. Plants serve as natural hosts. There are 15 species in this genus.
Foveavirus is a genus of viruses in the order Tymovirales, in the family Betaflexiviridae. Plants serve as natural hosts. There are eight species in this genus. Diseases associated with this genus include: mosaic and ringspot symptoms.
Tymovirus is a genus of viruses in the order Tymovirales, in the family Tymoviridae. Plants serve as natural hosts. There are 28 species in this genus.