The cell is the basic structural and functional unit of all forms of life or organisms. The term comes from the Latin word cellula meaning 'small room'. A biological cell consists of cytoplasm containing genetic material enclosed within a cell membrane. Most cells are only visible under a microscope. Except for highly-differentiated cell types (examples include red blood cells and gametes) most cells are capable of replication, and protein synthesis. Some types of cell are motile. Cells emerged on Earth about four billion years ago.
Most prokaryotes are the smallest of all organisms, ranging from 0.5 to 2.0μm in diameter.[31] The largest bacterium known, Thiomargarita magnifica, is visible to the naked eye with a length of 1 to 2cm.[32]
Archaea are enclosed in a cell envelope consisting of a plasma membrane and a cell wall. An exception to this is the Thermoplasma that only has the cell membrane.[15] The cell membranes of archaea are unique, consisting of ether-linked lipids. A unique form of metabolism in the archaean is methanogenesis. Their cell-surface appendage that gives them motility, as does the flagellum in bacteria, and some eukaryotic cells, is a unique structure known as an archaellum.[33] The DNA is contained in a circular chromosome in direct contact with the cytoplasm, in a region known as the nucleoid. Ribosomes are also in the cytoplasm.[citation needed] The archaea are noted for their extremophile species, and many are selectively evolved to thrive in extreme heat, cold, acidic, alkaline, or high salt conditions.[34] There are no known archaean pathogens.
Eukaryotes can be single-celled such as the diatom a microscopic alga, or multicellular. All animals, plants, most fungi, and some species of algae are multicellular.[35] Eukaryotes are distinguished by the presence of a membrane-bound nucleus.[36] The nucleus gives the eukaryote its name, which means "true nut" or "true kernel", where "nut" means the nucleus.[37] Eukaryotic cells can be 2 to 1000 times larger in diameter than a typical prokaryote.[38]
The cell membrane, or plasma membrane, is a selectively permeable biological membrane as an outer boundary of the cell that surrounds the cytoplasm.[41] The membrane serves to separate and protect a cell from its surrounding environment and is made mostly from a lipid bilayer of phospholipids, which are amphiphilic (partly hydrophobic and partly hydrophilic), and is sometimes referred to as a fluid mosaic membrane.[42] Embedded within this membrane is a macromolecular structure called the porosome the universal secretory portal in cells and a variety of protein molecules that act as channels and pumps that move different molecules into and out of the cell.[21] The membrane is semi-permeable, and selectively permeable, in that it can either let a substance (molecule or ion) pass through freely, to a limited extent or not at all.[43]Cell surface receptors embedded in the membrane allow cells to detect external signaling molecules such as hormones.[44]
Cytoskeleton
A fluorescent image of an endothelial cell. Nuclei are stained blue, mitochondria are stained red, and microfilaments are stained green.
The cytoskeleton acts to organize and maintain the cell's shape; anchors organelles in place; helps during endocytosis, the uptake of external materials by a cell, and cytokinesis, the separation of daughter cells after cell division; and moves parts of the cell in processes of growth and mobility. The cytoskeleton is composed of microtubules, intermediate filaments and microfilaments. In a neuron the intermediate filaments are known as neurofilaments. There are a great number of proteins associated with them, each controlling a cell's structure by directing, bundling, and aligning filaments.
Two different kinds of genetic material in the cell are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). Cells use DNA for their long-term information storage that is encoded in its DNA sequence.[21] RNA is used for information transport (e.g., mRNA) and enzymatic functions (e.g., ribosomal RNA). Transfer RNA (tRNA) molecules are used to add amino acids during protein translation.[45] Mitochondria have their own DNA (mitochondrial DNA).[46] The mitochondrial genome is a circular DNA molecule distinct from nuclear DNA. Although the mitochondrial DNA is very small compared to nuclear chromosomes,[21] it codes for 13 proteins involved in mitochondrial energy production and specific tRNAs.[47]
Foreign genetic material (most commonly DNA) can be artificially introduced into the cell by a process called transfection. This can be transient, if the DNA is not inserted into the cell's genome, or stable, if it is. Certain viruses can insert their genetic material into the genome via transformation.[48]
Many animal cells are ciliated and most cells except red blood cells have primary cilia.[51] Primary cilia play important roles in chemosensation and mechanosensation.[52] Each cilium may be "viewed as a sensory cellular antennae that coordinates a large number of cellular signaling pathways, sometimes coupling the signaling to ciliary motility or alternatively to cell division and differentiation."[53] Some animal cells have flagella such as flagelllatedprotists and sperm cells.[54]
Organelles are parts of the cell that are specialized for carrying out one or more vital functions, analogous to the organs of the human body (such as the heart, lung, and kidney, with each organ performing a different function).[21]
There are several types of organelles in a cell. Some (such as the nucleus and Golgi apparatus) are typically solitary,[citation needed] while others (such as mitochondria, chloroplasts, peroxisomes and lysosomes) can be numerous (hundreds to thousands). Most organelles vary in size and/or number based on the growth of the host cell.[55] The cytosol is the gelatinous fluid that fills the cell and surrounds the organelles, forming 30%–50% of a cell volume.[56]
Eukaryotic
Human cancer cells, specifically HeLa cells, with DNA stained blue. The central and rightmost cell are in interphase, so their DNA is diffuse and the entire nuclei are labelled. The cell on the left is going through mitosis and its chromosomes have condensed.
Cell nucleus: A cell's information center, the cell nucleus is the most conspicuous organelle found in a eukaryotic cell. It houses the cell's chromosomes, and is the place where almost all DNA replication and RNA synthesis (transcription) occur. The nucleus is spherical and separated from the cytoplasm by a double membrane called the nuclear envelope, space between these two membrane is called perinuclear space. The nuclear envelope isolates and protects a cell's DNA from various molecules that could accidentally damage its structure or interfere with its processing. During processing, DNA is transcribed, or copied into a special RNA, called messenger RNA (mRNA). This mRNA is then transported out of the nucleus, where it is translated into a specific protein molecule. The nucleolus is a specialized region within the nucleus where ribosome subunits are assembled. In prokaryotes, DNA processing takes place in the cytoplasm.[21]
Mitochondria and chloroplasts: generate energy for the cell. Mitochondria are self-replicating double membrane-bound organelles that occur in various numbers, shapes, and sizes in the cytoplasm of all eukaryotic cells.[21]Respiration occurs in the cell mitochondria, which generate the cell's energy by oxidative phosphorylation, using oxygen to release energy stored in cellular nutrients (typically pertaining to glucose) to generate ATP (aerobic respiration).[57] Mitochondria multiply by binary fission, like prokaryotes.[58]
Endoplasmic reticulum: The endoplasmic reticulum (ER) is a transport network for molecules targeted for certain modifications and specific destinations, as compared to molecules that float freely in the cytoplasm. The ER has two forms: the rough ER, which has ribosomes on its surface that secrete proteins into the ER, and the smooth ER, which lacks ribosomes.[21] The smooth ER plays a role in calcium sequestration and release, and helps in synthesis of lipid.[59]
Golgi apparatus: The primary function of the Golgi apparatus is to process and package the macromolecules such as proteins and lipids that are synthesized by the cell. It is typically organized as a stack of plate-like structures known as cisternae.[60]
Lysosomes and peroxisomes: Lysosomes contain digestive enzymes (acid hydrolases). They digest excess or worn-out organelles, food particles, and engulfed viruses or bacteria. Peroxisomes have enzymes that rid the cell of toxic peroxides, Lysosomes are optimally active in an acidic environment. The cell could not house these destructive enzymes if they were not contained in a membrane-bound system.[21][61]
Centrosome: the cytoskeleton organizer: The centrosome produces the microtubules of a cell—a key component of the cytoskeleton.[62] It directs the transport through the ER and the Golgi apparatus.[63] Centrosomes are composed of two centrioles which lie perpendicular to each other in which each has an organization like a cartwheel, which separate during cell division and help in the formation of the mitotic spindle. A single centrosome is present in the animal cells.[62] They are also found in some fungi and algae cells.[64]
Vacuoles: Vacuoles sequester waste products and in plant cells store water. They are described as liquid filled spaces and are surrounded by a membrane.[65] Some cells, most notably Amoeba, have contractile vacuoles, which can pump water out of the cell if there is too much water.[66] The vacuoles of plant cells and fungal cells are usually larger than those of animal cells.[65] Vacuoles of plant cells are surrounded by a membrane which transports ions against concentration gradients.[67]
Eukaryotic and prokaryotic
Ribosomes: The ribosome is a large complex of RNA and protein molecules.[21] They each consist of two subunits, and act as an assembly line where RNA from the nucleus is used to synthesise proteins from amino acids. Ribosomes can be found either floating freely or bound to a membrane (the rough endoplasmatic reticulum in eukaryotes, or the cell membrane in prokaryotes).[68]
Plastids: Plastid are membrane-bound organelle generally found in plant cells and euglenoids and contain specific pigments, thus affecting the colour of the plant and organism. These pigments helps in food storage and tapping of light energy. There are three types of plastids based upon the specific pigments. Chloroplasts contain chlorophyll and some carotenoid pigments which helps in the tapping of light energy during photosynthesis. Chromoplasts contain fat-soluble carotenoid pigments like orange carotene and yellow xanthophylls which helps in synthesis and storage. Leucoplasts are non-pigmented plastids and helps in storage of nutrients.[69]
Structures outside the membrane
Many cells have structures which exist wholly or partially outside the cell membrane. These structures are notable because they are not protected from the external environment by the cell membrane. In order to assemble these structures, their components must be carried across the cell membrane by export processes.
Many types of prokaryotic and eukaryotic cells have a carbohydrate-based cell wall. The cell wall acts to protect the cell mechanically and chemically from its environment, and is an additional layer of protection to the cell membrane. Different types of cell have cell walls made up of different materials; plant cell walls are primarily made up of cellulose, fungi cell walls are made up of chitin and bacteria cell walls are made up of peptidoglycan.[70]
Prokaryotes
Flagella
Flagella are organelles for cellular mobility. The bacterial flagellum stretches from cytoplasm through the cell membrane(s) and extrudes through the cell wall. They are long and thick thread-like appendages, protein in nature.[71] Separate varieties of flagellum are found in archaea and in eukaryotes, having independently evolved their own structure, composition, and propulsion mechanism.[72]
Fimbriae
A fimbria (plural fimbriae also known as a pilus, plural pili) is a short, thin, hair-like filament found on the surface of bacteria. Fimbriae are formed of a protein called pilin (antigenic) and are responsible for the attachment of bacteria to specific receptors on human cells (cell adhesion). There are special types of pili involved in bacterial conjugation.[73]
In meiosis, the DNA is replicated only once, while the cell divides twice. DNA replication only occurs before meiosis I. DNA replication does not occur when the cells divide the second time, in meiosis II.[75] Replication, like all cellular activities, requires specialized proteins.[21]
Between successive cell divisions, cells grow through the functioning of cellular metabolism. Cell metabolism is the process by which individual cells process nutrient molecules. Metabolism has two distinct divisions: catabolism, in which the cell breaks down complex molecules to produce energy and reducing power, and anabolism, in which the cell uses energy and reducing power to construct complex molecules and perform other biological functions.[77]
Complex sugars can be broken down into simpler sugar molecules called monosaccharides such as glucose. Once inside the cell, glucose is broken down to make adenosine triphosphate (ATP),[21] a molecule that possesses readily available energy, through two different pathways. In plant cells, chloroplasts create sugars by photosynthesis, using the energy of light to join molecules of water and carbon dioxide.[78]
Cells are capable of synthesizing new proteins, which are essential for the modulation and maintenance of cellular activities. This process involves the formation of new protein molecules from amino acid building blocks based on information encoded in DNA/RNA. Protein synthesis generally consists of two major steps: transcription and translation.[45]
Transcription is the process where genetic information in DNA is used to produce a complementary RNA strand. This RNA strand is then processed to give messenger RNA (mRNA), which is free to migrate into the cytoplasm. mRNA molecules bind to protein-RNA complexes called ribosomes located in the cytosol, where they are translated into polypeptide sequences. The ribosome mediates the formation of a polypeptide sequence based on the mRNA sequence. The mRNA sequence directly relates to the polypeptide sequence by binding to transfer RNA (tRNA) adapter molecules in binding pockets within the ribosome.[45] The new polypeptide then folds into a functional three-dimensional protein molecule.
Unicellular organisms can move in order to find food or escape predators. Common mechanisms of motion include flagella and cilia.[72]
In multicellular organisms, cells can move during processes such as wound healing, the immune response and cancer metastasis. For example, in wound healing in animals, white blood cells move to the wound site to kill the microorganisms that cause infection. Cell motility involves many receptors, crosslinking, bundling, binding, adhesion, motor and other proteins.[79] The process is divided into three steps: protrusion of the leading edge of the cell, adhesion of the leading edge and de-adhesion at the cell body and rear, and cytoskeletal contraction to pull the cell forward. Each step is driven by physical forces generated by unique segments of the cytoskeleton.[80][79]
In August 2020, scientists described one way cells—in particular cells of a slime mold and mouse pancreatic cancer-derived cells—are able to navigate efficiently through a body and identify the best routes through complex mazes: generating gradients after breaking down diffused chemoattractants which enable them to sense upcoming maze junctions before reaching them, including around corners.[81][82][83]
In complex multicellular organisms, cells specialize into different cell types that are adapted to particular functions.[87] In animals, major cell types include skin cells, muscle cells, neurons, blood cells, fibroblasts, stem cells, and others. Cell types differ both in appearance and function, yet are genetically identical. Cells are able to be of the same genotype but of different cell type due to the differential expression of the genes they contain.[88]
Most distinct cell types arise from a single totipotent cell, called a zygote, that differentiates into hundreds of different cell types during the course of development. Differentiation of cells is driven by different environmental cues (such as cell–cell interaction) and intrinsic differences (such as those caused by the uneven distribution of molecules during division).[89]
Cell signaling is the process by which a cell interacts with itself, other cells, and the environment. Typically, the signaling process involves three components: the first messenger (the ligand), the receptor, and the signal itself.[90] Most cell signaling is chemical in nature, and can occur with neighboring cells or more distant targets. Signal receptors are complex proteins or tightly bound multimer of proteins, located in the plasma membrane or within the interior.[91]
Each cell is programmed to respond to specific extracellular signal molecules, and this process is the basis of development, tissue repair, immunity, and homeostasis. Individual cells are able to manage receptor sensitivity including turning them off, and receptors can become less sensitive when they are occupied for long durations.[91] Errors in signaling interactions may cause diseases such as cancer, autoimmunity, and diabetes.[92]
The first evidence of multicellularity is from cyanobacteria-like organisms that lived between 3 and 3.5 billion years ago.[93] Other early fossils of multicellular organisms include the contested Grypania spiralis and the fossils of the black shales of the PalaeoproterozoicFrancevillian Group Fossil B Formation in Gabon.[97]
The spitzenkörper is a component of the endomembrane system found only in fungi, and is associated with hyphal tip growth. It is a phase-dark body that is composed of an aggregation of membrane-bound vesicles containing cell wall components, serving as a point of assemblage and release of such components intermediate between the Golgi and the cell membrane. The spitzenkörper is motile and generates new hyphal tip growth as it moves forward.[99]
Cytopathology studies and diagnoses diseases on the cellular level. Cytopathology is generally used on samples of free cells or tissue fragments, in contrast to the pathology branch of histopathology, which studies whole tissues. Cytopathology is commonly used to investigate diseases involving a wide range of body sites, often to aid in the diagnosis of cancer, and in the diagnosis of some infectious diseases and other inflammatory conditions. For example, a common application of cytopathology is the Pap smear, a screening test used to detect cervical cancer, and precancerous cervical lesions that may lead to cervical cancer.[100]
Stromatolites are left behind by cyanobacteria, known as blue-green algae. They are among the oldest fossils of life on Earth. This one-billion-year-old fossil is from Glacier National Park in the United States.
Cells emerged around 4 billion years ago.[103][104] The first cells were most likely heterotrophs. The early cell membranes were probably simpler and more permeable than modern ones, with only a single fatty acid chain per lipid. Lipids spontaneously form bilayered vesicles in water, and could have preceded RNA.[105][106]
In the theory of symbiogenesis, a merger of an archaean and an aerobic bacterium created the eukaryotes, with aerobic mitochondria, some 2.2 billion years ago. A second merger, 1.6 billion years ago, added chloroplasts, creating the green plants.
Eukaryotic cells were created some 2.2 billion years ago in a process called eukaryogenesis. This is widely agreed to have involved symbiogenesis, in which archaea and bacteria came together to create the first eukaryotic common ancestor.[107] However, the sequence of the steps involved has been disputed.[citation needed] It evolved into a population of single-celled organisms that included the last eukaryotic common ancestor, gaining capabilities along the way.[108][109]
In 1665, Robert Hooke examined a thin slice of cork under his microscope, and saw a structure of small enclosures. He wrote "I could exceeding plainly perceive it to be all perforated and porous, much like a honeycomb, but that the pores of it were not regular".[114] To further support his theory, Matthias Schleiden and Theodor Schwann studied cells of both animal and plants. What they discovered were significant differences between the two types of cells. This put forth the idea that cells were fundamental to both plants and animals.[115]
Cell culture that allows for a large number of a specific cell type to be cultivated and studied. Cell culture can provide model systems for the study of ageing for example; the effects of drugs and toxins on the cells, and carcinogenesis.[127] Other uses include drug screening and drug development.
Fluorescence microscopy uses fluorescent markers such as GFP to label a specific cell component. A specific light wavelength is used to excite the fluorescent marker which can then be visualized.[127]
Phase-contrast microscopy uses the optical aspect of light to represent the solid, liquid, and gas-phase changes as brightness differences.[127]
Confocal microscopy combines fluorescence microscopy with imaging by focusing light and snap shooting instances to form a 3-D image.[127]
Transmission electron microscopy involves metal staining and the passing of electrons through the cells, which will be deflected upon interaction with metal. This ultimately forms an image of the components being studied.[127]
Cytometry – cells are placed in the machine which uses a beam to scatter them based on different aspects separating them based on size and content. Cells may be tagged with GFP-fluorescence and separated that way.[128]
Cell fractionation is a process that requires breaking up the cell using high temperature or sonification followed by centrifugation to separate the cell components for study.[127]
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↑ Hooke, Robert (1665). Micrographia: ... London: Royal Society of London. p.113. ... I could exceedingly plainly perceive it to be all perforated and porous, much like a Honey-comb, but that the pores of it were not regular [...] these pores, or cells, [...] were indeed the first microscopical pores I ever saw, and perhaps, that were ever seen, for I had not met with any Writer or Person, that had made any mention of them before this ... – Hooke describing his observations on a thin slice of cork. See also: Robert HookeArchived 1997-06-06 at the Wayback Machine
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