List of microbiota species of the lower reproductive tract of women

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Candida albicans Candida albicans.jpg
Candida albicans

This is the list of healthy vaginal microbiota (VMB), which is defined as the group of species and genera that generally are found to have lack of symptoms, absence of various infections, and result in good pregnancy outcomes. [1] VMB is dominated mainly by Lactobacillus species. This is the list of organisms that are found in the lower reproductive tract of sexually mature women who are not immunocompromised. A partial description of pathogens that can be found in the lower and upper reproductive tract of women can be found in the article sexually transmitted infection. The organisms listed below are capable of causing illness if for some reason there is a change in vaginal pH or a change in the ratio of one organism to another. For example, Candida is a normal inhabitant of a healthy reproductive tract but an overgrowth of this organism can cause candidiasis. [2] [3] [4]

Contents

Normal microbiota

Gram stain of lactobacilli and squamous epithelial cells in vaginal swab Lactobacilli (Gram stain).jpg
Gram stain of lactobacilli and squamous epithelial cells in vaginal swab

This is the list of the normal flora that are found in the lower reproductive tract of sexually mature women who exhibit no symptoms of illness and who are not immunocompromised. Lactobacilli predominate. [4] [5] [6] These organisms protect against infection. Vaginal microbiota composition may have a genetic component. [3]

Anaerobes

Bacteroides Bacteroides biacutis 01.jpg
Bacteroides
Fusobacterium Fusobacterium novum 01.jpg
Fusobacterium
Staphylococcus epidermidis 01 Staphylococcus epidermidis 01.png
Staphylococcus epidermidis 01
Enterococcus faecalis Enterococcus faecalis.jpg
Enterococcus faecalis
GenusspeciesGram stainformgenome sequencedreference
Peptostreptococcus spp.+ cocci [2] [4]
Clostridium spp.+bacillus [2] [4] [7]
Lactobacillus spp.+bacillus [2] [5] [7]
Lactobacillus acidophilus +bacillusX [2] [5] [8] [9]
Lactobacillus crispatus +bacillus [1] [5] [7] [8]
Lactobacillus johnsonii +bacillusX [7] [9]
Lactobacillus sakei +bacillusX [9]
Lactobacillus bulgaris +bacillusX [9]
Lactobacillus jensenii +bacillus [5] [7] [8]
Lactobacillus rhamnosus +bacillus [8]
Lactobacillus reuteri +bacillus [8]
Lactobacillus Lactobacillus casei var rhamnosus +bacillus [1] [8]
Lactobacillus gasseri +bacillus [5] [8]
Lactobacillus fermentum +bacillus [8]
Lactobacillus iners +bacillus [1] [5]
Lactobacillus helveticus +bacillus [5] [8]
Lactobacillus leichmannii +bacillus [8]
Lactobacillus brevis +bacillus [8]
Lactobacillus plantarum +bacillusX [1] [8] [9]
Lactobacillus delbrueckii +bacillus [8]
Lactobacillus vaginalis +bacillus [1]
Lactobacillus salivarius +bacillusX [1] [9]
Lactobacillus coleohominis +bacillus [1]
Lactobacillus pentosus +bacillus [1]
Propionibacterium spp.+bacillus [2] [4]
Eubacterium spp.+bacillus [2]
Bifidobacterium spp.+bacillus [2]
Prevotella spp.-bacillus [2]
Bacteroides spp.-bacillus [2] [7]
Bacteroides fragilis -bacillus [2]
Fusobacterium spp.-bacillus [2]
Veillonella spp.-cocci [2]
Diphtheroids spp.+bacillus [2]
Actinomycetales spp. [7]

Aerobes

These bacteria may be detected as transients or are marginally discernable with PCR techniques. They are also opportunistic pathogens and their overgrowth is considered an infection though symptoms and signs may be absent.

Escherichia coli (257 06) Gramnegative rods Escherichia coli (257 06) Gramnegative rods.jpg
Escherichia coli (257 06) Gramnegative rods
GenusspeciesGram stainformreference
Staphylococcus aureus +cocci [2]
Staphylococcus epidermidis +cocci [2]
Group B Streptococcus spp.+cocci [2] [7]
Enterococcus faecalis spp.+cocci [2]
Staphylococcus spp.+cocci [2]
Actinomyces israelii +bacillus [2]
Actinomyces neuii +bacillus [1]
Escherichia coli -bacillus [2]
Klebsiella spp.-bacillus [2]
Proteus spp.-bacillus [2]
Enterobacter spp.-bacillus [2]
Acinetobacter spp.-bacillus [2]
Citrobacter spp.-bacillus [2]
Pseudomonas spp.-bacillus [2]

While the vaginal microbiota is populated predominantly by Lactobacillus spp. in 71% of women, 29% of asymptomatic, healthy women possess a microbiota essentially lacking in Lactobacillus and instead the following groups have been isolated from this population. This microbiota is affiliated with ethnicity:

GenusspeciesGram stainformreference
Aerococcus spp.cocci [3]
Atopobium spp.bacillus [3]
Dialister spp.bacillus [3]
Eggerthella spp.bacillus [3]
Finegoldia spp. [3]
Gardnerella spp.coccobacilli [3]
Megasphaera spp. [3]
Mobiluncus spp.bacillus [3]
Peptoniphilus spp. [3]
Prevotella spp. [3]
Sneathia spp. [3]

Yeast

Candida albicans (Gram stain) Candida Gram stain.jpg
Candida albicans (Gram stain)

Candida albicans and other spp. [2]

Microbiota changes

Pre-pubescent girls, women in menarche, and postmenopausal women have lower populations of Lactobacillus spp. in proportion to the other species. Hormone replacement therapy in postmenopausal women restores the microbiota to that of a reproductive-aged woman. The microbiota populations change in response to the menstrual cycle. Pregnancy alters the microbiota, with a reduction in species/genus diversity. [3] Overgrowth of Candida albicans or other Candida (yeast infections) sometimes occurs after antibiotic therapy. [2] Bacterial vaginosis results in altered populations and ratios of the normal microbiota. [10] [3] [11] There has been no link demonstrated between taking oral probiotics and maintaining normal microbiota populations of lactobacilli. [4]

Related Research Articles

<span class="mw-page-title-main">Bacterial vaginosis</span> Excessive growth of bacteria in the vagina

Bacterial vaginosis (BV) is an infection of the vagina caused by excessive growth of bacteria. Common symptoms include increased vaginal discharge that often smells like fish. The discharge is usually white or gray in color. Burning with urination may occur. Itching is uncommon. Occasionally, there may be no symptoms. Having BV approximately doubles the risk of infection by a number of sexually transmitted infections, including HIV/AIDS. It also increases the risk of early delivery among pregnant women.

<span class="mw-page-title-main">Candidiasis</span> Fungal infection due to any type of Candida

Candidiasis is a fungal infection due to any species of the genus Candida. When it affects the mouth, in some countries it is commonly called thrush. Signs and symptoms include white patches on the tongue or other areas of the mouth and throat. Other symptoms may include soreness and problems swallowing. When it affects the vagina, it may be referred to as a yeast infection or thrush. Signs and symptoms include genital itching, burning, and sometimes a white "cottage cheese-like" discharge from the vagina. Yeast infections of the penis are less common and typically present with an itchy rash. Very rarely, yeast infections may become invasive, spreading to other parts of the body. This may result in fevers along with other symptoms depending on the parts involved.

<i>Lactobacillus</i> Genus of bacteria

Lactobacillus is a genus of gram-positive, aerotolerant anaerobes or microaerophilic, rod-shaped, non-spore-forming bacteria. Until 2020, the genus Lactobacillus comprised over 260 phylogenetically, ecologically, and metabolically diverse species; a taxonomic revision of the genus assigned lactobacilli to 25 genera.

<span class="mw-page-title-main">Human microbiome</span> Microorganisms in or on human skin and biofluids

The human microbiome is the aggregate of all microbiota that reside on or within human tissues and biofluids along with the corresponding anatomical sites in which they reside, including the skin, mammary glands, seminal fluid, uterus, ovarian follicles, lung, saliva, oral mucosa, conjunctiva, biliary tract, and gastrointestinal tract. Types of human microbiota include bacteria, archaea, fungi, protists, and viruses. Though micro-animals can also live on the human body, they are typically excluded from this definition. In the context of genomics, the term human microbiome is sometimes used to refer to the collective genomes of resident microorganisms; however, the term human metagenome has the same meaning.

Vaginitis, also known as vulvovaginitis, is inflammation of the vagina and vulva. Symptoms may include itching, burning, pain, discharge, and a bad smell. Certain types of vaginitis may result in complications during pregnancy.

<i>Lactobacillus acidophilus</i> Species of bacterium

Lactobacillus acidophilus is a rod-shaped, Gram-positive, homofermentative, anaerobic microbe first isolated from infant feces in the year 1900. The species is most commonly found in humans, specifically the gastrointestinal tract, oral cavity, and vagina, as well as various fermented foods such as fermented milk or yogurt. The species most readily grows at low pH levels, and has an optimum growth temperature of 37 °C. Certain strains of L. acidophilus show strong probiotic effects, and are commercially used in dairy production. The genome of L. acidophilus has been sequenced.

<span class="mw-page-title-main">Vaginal discharge</span> Medical condition

Vaginal discharge is a mixture of liquid, cells, and bacteria that lubricate and protect the vagina. This mixture is constantly produced by the cells of the vagina and cervix, and it exits the body through the vaginal opening. The composition, amount, and quality of discharge varies between individuals and can vary throughout the menstrual cycle and throughout the stages of sexual and reproductive development. Normal vaginal discharge may have a thin, watery consistency or a thick, sticky consistency, and it may be clear or white in color. Normal vaginal discharge may be large in volume but typically does not have a strong odor, nor is it typically associated with itching or pain. While most discharge is considered physiologic or represents normal functioning of the body, some changes in discharge can reflect infection or other pathological processes. Infections that may cause changes in vaginal discharge include vaginal yeast infections, bacterial vaginosis, and sexually transmitted infections. The characteristics of abnormal vaginal discharge vary depending on the cause, but common features include a change in color, a foul odor, and associated symptoms such as itching, burning, pelvic pain, or pain during sexual intercourse.

<span class="mw-page-title-main">Aposymbiosis</span>

Aposymbiosis occurs when symbiotic organisms live apart from one another. Studies have shown that the lifecycles of both the host and the symbiont are affected in some way, usually negative, and that for obligate symbiosis the effects can be drastic. Aposymbiosis is distinct from exsymbiosis, which occurs when organisms are recently separated from a symbiotic association. Because symbionts can be vertically transmitted from parent to offspring or horizontally transmitted from the environment, the presence of an aposymbiotic state suggests that transmission of the symbiont is horizontal. A classical example of a symbiotic relationship with an aposymbiotic state is the Hawaiian bobtail squid Euprymna scolopes and the bioluminescent bacteria Vibrio fischeri. While the nocturnal squid hunts, the bacteria emit light of similar intensity of the moon which camouflages the squid from predators. Juveniles are colonized within hours of hatching and Vibrio must outcompete other bacteria in the seawater through a system of recognition and infection.

Dysbiosis is characterized by a disruption to the microbiome resulting in an imbalance in the microbiota, changes in their functional composition and metabolic activities, or a shift in their local distribution. For example, a part of the human microbiota such as the skin flora, gut flora, or vaginal flora, can become deranged, with normally dominating species underrepresented and normally outcompeted or contained species increasing to fill the void. Dysbiosis is most commonly reported as a condition in the gastrointestinal tract.

<span class="mw-page-title-main">Vaginal flora</span> Microorganisms present in the vagina

Vaginal flora, vaginal microbiota or vaginal microbiome are the microorganisms that colonize the vagina. They were discovered by the German gynecologist Albert Döderlein in 1892 and are part of the overall human flora. The amount and type of bacteria present have significant implications for an individual's overall health. The primary colonizing bacteria of a healthy individual are of the genus Lactobacillus, such as L. crispatus, and the lactic acid they produce is thought to protect against infection by pathogenic species.

Prevotella is a genus of Gram-negative bacteria.

Tannerella forsythia is an anaerobic, Gram-negative bacterial species of the Bacteroidota phylum. It has been implicated in periodontal diseases and is a member of the red complex of periodontal pathogens. T. forsythia was previously named Bacteroides forsythus and Tannerella forsythensis.

<span class="mw-page-title-main">Vaginal yeast infection</span> Medical condition

Vaginal yeast infection, also known as candidal vulvovaginitis and vaginal thrush, is excessive growth of yeast in the vagina that results in irritation. The most common symptom is vaginal itching, which may be severe. Other symptoms include burning with urination, a thick, white vaginal discharge that typically does not smell bad, pain during sex, and redness around the vagina. Symptoms often worsen just before a woman's period.

The vaginal flora in pregnancy, or vaginal microbiota in pregnancy, is different from the vaginal flora before sexual maturity, during reproductive years, and after menopause. A description of the vaginal flora of pregnant women who are immunocompromised is not covered in this article. The composition of the vaginal flora significantly differs in pregnancy. Bacteria or viruses that are infectious most often have no symptoms.

Lactobacillus jensenii is a normal inhabitant of the lower reproductive tract in healthy women. L. jensenii makes up 23% of vaginal microflora that is naturally occurring. It is also found on the skins of grapes at the time of their harvest. L. jensenii is sometimes used in producing fermented foods.

<span class="mw-page-title-main">Placental microbiome</span>

The placental microbiome is the nonpathogenic, commensal bacteria claimed to be present in a healthy human placenta and is distinct from bacteria that cause infection and preterm birth in chorioamnionitis. Until recently, the healthy placenta was considered to be a sterile organ but now genera and species have been identified that reside in the basal layer.

<span class="mw-page-title-main">Uterine microbiome</span>

The uterine microbiome is the commensal, nonpathogenic, bacteria, viruses, yeasts/fungi present in a healthy uterus, amniotic fluid and endometrium and the specific environment which they inhabit. It has been only recently confirmed that the uterus and its tissues are not sterile. Due to improved 16S rRNA gene sequencing techniques, detection of bacteria that are present in low numbers is possible. Using this procedure that allows the detection of bacteria that cannot be cultured outside the body, studies of microbiota present in the uterus are expected to increase.

LACTIN-V, also known as CTV-05 or as Lactobacillus crispatus CTV-05, is a live biopharmaceutical medication containing a strain of Lactobacillus crispatus (L. crispatus) which is under development for the treatment of urinary tract infections (UTIs) and bacterial vaginosis (BV). It is administered intravaginally and is described as the first vaginal microbiome (VMB)-based live biotherapeutic product (LBP). Depletion of hydrogen peroxide (H2O2)-producing Lactobacillus strains such as Lactobacillus crispatus in the vagina has been strongly associated with BV and UTIs. Most commercially available probiotic Lactobacillus strains are not vaginal strains and do not appear to improve vaginal or urinary health outcomes. The Centers for Disease Control and Prevention (CDC)'s Sexually Transmitted Infections Treatment Guidelines (2021) noted that intravaginal LACTIN-V produced a considerably lower recurrence of BV following initial antibiotic treatment with metronidazole in a randomized controlled trial. However, the guidelines also noted that LACTIN-V is not yet Food and Drug Administration (FDA)-approved or commercially available. As of December 2021, LACTIN-V is in phase 2/3 clinical trials for the treatment of UTIs and is in phase 2 trials for the treatment of BV. It was originated by GyneLogix and is under development by Osel Inc., the National Institute of Allergy and Infectious Diseases, and other organizations.

References

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Further reading

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