EIF5B

EIF5B
Identifiers
Aliases	EIF5B , IF2, eukaryotic translation initiation factor 5B
External IDs	OMIM: 606086 MGI: 2441772 HomoloGene: 134613 GeneCards: EIF5B
Gene location (Human) Chr. Chromosome 2 (human) [1] Band 2q11.2 Start 99,337,371 bp [1] End 99,401,326 bp [1]
Gene location (Mouse) Chr. Chromosome 1 (mouse) [2] Band 1|1 B Start 38,037,091 bp [2] End 38,094,660 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in oocyte secondary oocyte internal globus pallidus pericardium cardia external globus pallidus vena cava optic nerve inferior olivary nucleus saphenous vein Top expressed in mirror secondary oocyte parotid gland lacrimal gland yolk sac seminal vesicula myocardium of ventricle seminiferous tubule maxillary prominence intercostal muscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function nucleotide binding protein binding metal ion binding GTP binding hydrolase activity translation initiation factor activity RNA binding GTPase activity Cellular component cytosol nucleus cytoplasm Biological process regulation of translational initiation translational initiation protein biosynthesis Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 9669 226982 Ensembl ENSG00000158417 ENSMUSG00000026083 UniProt O60841 Q05D44 RefSeq (mRNA) NM_015904 NM_198303 RefSeq (protein) NP_056988 NP_938045 Location (UCSC) Chr 2: 99.34 – 99.4 Mb Chr 1: 38.04 – 38.09 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Eukaryotic translation initiation factor 5B is a protein that in humans is encoded by the EIF5B gene. ^{[5] [6] [7]}

Accurate initiation of translation in eukaryotes is complex and requires many factors, some of which are composed of multiple subunits. The process is simpler in bacteria which have only three initiation factors (IF1, IF2, IF3). Two of these factors are conserved in eukaryotes: the homolog of IF1 is eIF1A and the homolog of IF2 is eIF5B. This gene encodes eIF5B. Factors eIF1A and eIF5B interact on the ribosome along with other initiation factors and GTP to position the initiation methionine tRNA on the start codon of the mRNA so that translation initiates accurately. ^[7]

References

1. GRCh38: Ensembl release 89: ENSG00000158417 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000026083 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Lee JH, Choi SK, Roll-Mecak A, Burley SK, Dever TE (May 1999). "Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2". Proc Natl Acad Sci U S A. 96 (8): 4342–7. Bibcode:1999PNAS...96.4342L. doi: 10.1073/pnas.96.8.4342 . PMC   16334 . PMID   10200264.
6. Wilson SA, Sieiro-Vazquez C, Edwards NJ, Iourin O, Byles ED, Kotsopoulou E, Adamson CS, Kingsman SM, Kingsman AJ, Martin-Rendon E (Oct 1999). "Cloning and characterization of hIF2, a human homologue of bacterial translation initiation factor 2, and its interaction with HIV-1 matrix". Biochem J. 342. ( Pt 1): 97–103. doi:10.1042/bj3420097. PMC   1220441 . PMID   10432305.
7. "Entrez Gene: EIF5B eukaryotic translation initiation factor 5B".

Further reading

• Unbehaun A, Marintchev A, Lomakin IB, et al. (2007). "Position of eukaryotic initiation factor eIF5B on the 80S ribosome mapped by directed hydroxyl radical probing". EMBO J. 26 (13): 3109–23. doi:10.1038/sj.emboj.7601751. PMC   1914099 . PMID   17568775.
• Hayashi R, Ueda T, Farwell MA, Takeuchi N (2007). "Nuclear respiratory factor 2 activates transcription of human mitochondrial translation initiation factor 2 gene". Mitochondrion. 7 (3): 195–203. doi:10.1016/j.mito.2006.10.005. PMID   17161026.
• Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983. S2CID   7827573.
• Beausoleil SA, Villén J, Gerber SA, et al. (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID   16964243. S2CID   14294292.
• Rual JF, Venkatesan K, Hao T, et al. (2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID   16189514. S2CID   4427026.
• Gevaert K, Staes A, Van Damme J, et al. (2006). "Global phosphoproteome analysis on human HepG2 hepatocytes using reversed-phase diagonal LC". Proteomics. 5 (14): 3589–99. doi:10.1002/pmic.200401217. PMID   16097034. S2CID   895879.
• Beausoleil SA, Jedrychowski M, Schwartz D, et al. (2004). "Large-scale characterization of HeLa cell nuclear phosphoproteins". Proc. Natl. Acad. Sci. U.S.A. 101 (33): 12130–5. Bibcode:2004PNAS..10112130B. doi: 10.1073/pnas.0404720101 . PMC   514446 . PMID   15302935.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Marintchev A, Kolupaeva VG, Pestova TV, Wagner G (2003). "Mapping the binding interface between human eukaryotic initiation factors 1A and 5B: a new interaction between old partners". Proc. Natl. Acad. Sci. U.S.A. 100 (4): 1535–40. Bibcode:2003PNAS..100.1535M. doi: 10.1073/pnas.0437845100 . PMC   149867 . PMID   12569173.
• Olsen DS, Savner EM, Mathew A, et al. (2003). "Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo". EMBO J. 22 (2): 193–204. doi:10.1093/emboj/cdg030. PMC   140105 . PMID   12514125.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Sørensen HP, Hedegaard J, Sperling-Petersen HU, Mortensen KK (2002). "Remarkable conservation of translation initiation factors: IF1/eIF1A and IF2/eIF5B are universally distributed phylogenetic markers". IUBMB Life. 51 (5): 321–7. doi:10.1080/152165401317190842. PMID   11699879. S2CID   45654480.
• Nagase T, Ishikawa K, Suyama M, et al. (1999). "Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 5 (5): 277–86. doi: 10.1093/dnares/5.5.277 . PMID   9872452.