40S ribosomal protein S17

RPS17
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 4UG0, 4V6X, 5A2Q, 5AJ0, 4UJE, 4D5L, 4UJD, 5FLX, 4D61, 4UJC
Identifiers
Aliases	RPS17 , DBA4, RPS17L, RPS17L1, RPS17L2, S17, ribosomal protein S17
External IDs	OMIM: 180472 MGI: 1309526 HomoloGene: 110867 GeneCards: RPS17
Gene location (Human) Chr. Chromosome 15 (human) [1] Band 15q25.2 Start 82,536,750 bp [1] End 82,540,459 bp [1]
Gene location (Mouse) Chr. Chromosome 7 (mouse) [2] Band 7|7 D3 Start 80,992,480 bp [2] End 80,995,002 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in ganglionic eminence corpus callosum skin of abdomen lymph node Achilles tendon right uterine tube islet of Langerhans subcutaneous adipose tissue vagina canal of the cervix Top expressed in morula lip yolk sac superior frontal gyrus spermatocyte thymus neural tube spermatid proximal tubule esophagus More reference expression data BioGPS n/a
Gene ontology Molecular function structural constituent of ribosome RNA binding Cellular component cytosol ribosome membrane focal adhesion intracellular anatomical structure cytosolic small ribosomal subunit extracellular exosome nucleoplasm extracellular matrix synapse Biological process viral transcription SRP-dependent cotranslational protein targeting to membrane erythrocyte homeostasis translational initiation ribosomal small subunit assembly nuclear-transcribed mRNA catabolic process, nonsense-mediated decay ribosomal small subunit biogenesis protein biosynthesis rRNA processing Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 6218 20068 Ensembl ENSG00000278229 ENSG00000182774 ENSMUSG00000061787 UniProt P08708 P63276 RefSeq (mRNA) NM_001021 NM_001199057 NM_009092 RefSeq (protein) NP_001012 NP_033118 Location (UCSC) Chr 15: 82.54 – 82.54 Mb Chr 7: 80.99 – 81 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

40S ribosomal protein S17 is a protein that in humans is encoded by the RPS17 gene. ^{[5] [6] [7]}

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S17E family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. ^[7]

References

1. ENSG00000182774 GRCh38: Ensembl release 89: ENSG00000278229, ENSG00000182774 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000061787 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Feo S, Davies B, Fried M (Jun 1992). "The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome". Genomics. 13 (1): 201–7. doi:10.1016/0888-7543(92)90221-D. PMID   1577483.
6. Filipenko ML, Iantsen EI, Muravlev AI, Kopantsev EP, Karpova GG, Mertvetsov NP (Oct 1995). "[Mapping the genes for ribosomal proteins S14 and S17 on human chromosomes using cDNA from a panel of hybrid cells]". Bioorg Khim. 21 (5): 349–53. PMID   7661859.
7. "Entrez Gene: RPS17 ribosomal protein S17".

Further reading

• Wool IG, Chan YL, Glück A (1996). "Structure and evolution of mammalian ribosomal proteins". Biochem. Cell Biol. 73 (11–12): 933–47. doi:10.1139/o95-101. PMID   8722009.
• Chen IT, Roufa DJ (1989). "The transcriptionally active human ribosomal protein S17 gene". Gene. 70 (1): 107–16. doi:10.1016/0378-1119(88)90109-6. PMID   3240863.
• Chen IT, Dixit A, Rhoads DD, Roufa DJ (1986). "Homologous ribosomal proteins in bacteria, yeast, and humans". Proc. Natl. Acad. Sci. U.S.A. 83 (18): 6907–11. Bibcode:1986PNAS...83.6907C. doi: 10.1073/pnas.83.18.6907 . PMC   386619 . PMID   3529092.
• Mundus DA, Bulygin KN, Yamkovoy VI, et al. (1993). "Structural arrangement of the codon-anticodon interaction area in human placenta ribosomes. Affinity labelling of the 40S subunits by derivatives of oligoribonucleotides containing the AUG codon". Biochim. Biophys. Acta. 1173 (3): 273–82. doi:10.1016/0167-4781(93)90124-v. PMID   8318536.
• Vladimirov SN, Ivanov AV, Karpova GG, et al. (1996). "Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry". Eur. J. Biochem. 239 (1): 144–9. doi: 10.1111/j.1432-1033.1996.0144u.x . PMID   8706699.
• Patel HR, Terada N, Gelfand EW (1996). "Rapamycin-sensitive phosphorylation of ribosomal protein S17 by p70 S6 kinase". Biochem. Biophys. Res. Commun. 227 (2): 507–12. doi:10.1006/bbrc.1996.1537. PMID   8878544.
• Kenmochi N, Kawaguchi T, Rozen S, et al. (1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi: 10.1101/gr.8.5.509 . PMID   9582194.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Ballif BA, Villén J, Beausoleil SA, et al. (2005). "Phosphoproteomic analysis of the developing mouse brain". Mol. Cell. Proteomics. 3 (11): 1093–101. doi: 10.1074/mcp.M400085-MCP200 . PMID   15345747.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID   15635413. S2CID   4344740.
• Yu Y, Ji H, Doudna JA, Leary JA (2005). "Mass spectrometric analysis of the human 40S ribosomal subunit: Native and HCV IRES-bound complexes". Protein Sci. 14 (6): 1438–46. doi:10.1110/ps.041293005. PMC   2253395 . PMID   15883184.

External links

• GeneReviews/NCBI/NIH/UW entry on Diamond-Blackfan Anemia