MRPS16

MRPS16
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 3J9M
Identifiers
Aliases	MRPS16 , COXPD2, MRP-S16, RPMS16, CGI-132, mitochondrial ribosomal protein S16
External IDs	OMIM: 609204 MGI: 1913492 HomoloGene: 9370 GeneCards: MRPS16
Gene location (Human) Chr. Chromosome 10 (human) [1] Band 10q22.2 Start 73,248,843 bp [1] End 73,252,693 bp [1]
Gene location (Mouse) Chr. Chromosome 14 (mouse) [2] Band 14|14 A3 Start 20,439,372 bp [2] End 20,443,702 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in right adrenal gland gastrocnemius muscle left adrenal gland left ventricle rectum right uterine tube right lobe of liver islet of Langerhans body of pancreas body of stomach Top expressed in digastric muscle temporal muscle sternocleidomastoid muscle extraocular muscle cardiac muscles myocardium of ventricle triceps brachii muscle calvaria brown adipose tissue intercostal muscle More reference expression data BioGPS n/a
Gene ontology Molecular function structural constituent of ribosome protein binding Cellular component mitochondrial inner membrane ribosome intracellular anatomical structure mitochondrion mitochondrial small ribosomal subunit cytosol Biological process mitochondrial translational elongation mitochondrial translational termination protein biosynthesis mitochondrial translation Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 51021 66242 Ensembl ENSG00000182180 ENSMUSG00000049960 UniProt Q9Y3D3 Q9CPX7 RefSeq (mRNA) NM_016065 NM_025440 RefSeq (protein) NP_057149 NP_079716 Location (UCSC) Chr 10: 73.25 – 73.25 Mb Chr 14: 20.44 – 20.44 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

28S ribosomal protein S16, mitochondrial is a protein that in humans is encoded by the MRPS16 gene. ^{[5] [6]}

Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S16P family. The encoded protein is one of the most highly conserved ribosomal proteins between mammalian and yeast mitochondria. Three pseudogenes (located at 8q21.3, 20q13.32, 22q12-q13.1) for this gene have been described. ^[6]

References

1. GRCh38: Ensembl release 89: ENSG00000182180 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000049960 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Lai CH, Chou CY, Ch'ang LY, Liu CS, Lin W (Aug 2000). "Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics". Genome Res. 10 (5): 703–13. doi:10.1101/gr.10.5.703. PMC   310876 . PMID   10810093.
6. "Entrez Gene: MRPS16 mitochondrial ribosomal protein S16".

Further reading

• Cavdar Koc E, Burkhart W, Blackburn K, et al. (2001). "The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present". J. Biol. Chem. 276 (22): 19363–74. CiteSeerX   10.1.1.501.8919 . doi: 10.1074/jbc.M100727200 . PMID   11279123.
• Suzuki T, Terasaki M, Takemoto-Hori C, et al. (2001). "Proteomic analysis of the mammalian mitochondrial ribosome. Identification of protein components in the 28 S small subunit". J. Biol. Chem. 276 (35): 33181–95. doi: 10.1074/jbc.M103236200 . PMID   11402041.
• Kenmochi N, Suzuki T, Uechi T, et al. (2001). "The human mitochondrial ribosomal protein genes: mapping of 54 genes to the chromosomes and implications for human disorders". Genomics. 77 (1–2): 65–70. doi:10.1006/geno.2001.6622. PMID   11543634.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Zhang Z, Gerstein M (2003). "Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome". Genomics. 81 (5): 468–80. doi:10.1016/S0888-7543(03)00004-1. PMID   12706105.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Miller C, Saada A, Shaul N, et al. (2005). "Defective mitochondrial translation caused by a ribosomal protein (MRPS16) mutation". Ann. Neurol. 56 (5): 734–8. doi:10.1002/ana.20282. PMID   15505824. S2CID   8781100.