SCN2A

Last updated

SCN2A
Protein SCN2A PDB 1byy.png
Available structures
PDB Ortholog search: PDBe RCSB
Identifiers
Aliases SCN2A , BFIC3, BFIS3, BFNIS, EIEE11, HBA, HBSCI, HBSCII, NAC2, Na(v)1.2, Nav1.2, SCN2A1, SCN2A2, sodium voltage-gated channel alpha subunit 2, DEE11, EA9
External IDs OMIM: 182390; MGI: 98248; HomoloGene: 75001; GeneCards: SCN2A; OMA:SCN2A - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_001040142
NM_001040143
NM_021007
NM_001371246
NM_001371247

Contents

NM_001099298
NM_001346679
NM_001346680

RefSeq (protein)

NP_001035232
NP_001035233
NP_066287
NP_001358175
NP_001358176

NP_001092768
NP_001333608
NP_001333609

Location (UCSC) Chr 2: 165.19 – 165.39 Mb Chr 2: 65.45 – 65.6 Mb
PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Sodium channel protein type 2 subunit alpha, also known as Nav1.2, is a membrane protein encoded by the SCN2A gene in humans. [5] It represents one member of the sodium channel alpha subunit gene family. The SCN2A gene is located on chromosome 2 (2q24.3) in proximity to two other voltage-gated sodium channel genes, namely SCN1A and SCN9A . [6] Nav1.2 is distributed throughout the human central nervous system where it plays a major role in the initiation and propagation of action potentials. It is absent from peripheral tissues. [6] Pathologic mutations in the SCN2A gene cause a broad spectrum of neurological conditions, such as epilepsy, autism spectrum disorders and/or developmental delay, called SCN2A-related disorders. [7]

Structure

The SCN2A gene is composed of 27 exons and comprises more than 150 kilobases. There are two major splice variants known, a neonatal isoform and an adult isoform, which differ in one amino acid at position 209 (Asn versus Asp). [6] The neonatal isoform might limit neuronal excitability during development. [7] :23 The voltage-gated sodium channel Nav1.2 encoded by the SCN2A gene consists of 2005 amino acids. [6] This single polypeptide forms a pseudotetrameric channel of four similar domains (I - IV) where each domain contains 6 transmembrane segments, including a voltage sensing region, a pore forming region and an ion-selectivity filter. [8] In the living organism, Nav1.2 is a transmembrane glycoprotein complex composed of a large alpha subunit (encoded by the SCN2A gene) and one or more regulatory beta subunits (encoded by SCNxB genes). [9]

Function

The principal function of Nav1.2, similar to other members of the voltage-gated sodium channel family, is to mediate sodium influx into neurons upon membrane depolarization, thereby generating and propagating action potentials across distinct neuronal subtypes. [6]

Nav1.2 functions mainly in excitatory neurons in cortical structures similar to Nav1.6, [6] whereas expression of Nav1.1 (encoded by the SCN1A gene) is found in mutual distinct, inhibitory neuronal classes. [10] However, the distribution of Nav1.2 changes during development. Nav1.2 channels are initially expressed at the axon initial segments (the site of action potential initiation) of excitatory pyramidal cells in the hippocampus and cortex, but their levels decline during development. At the age of 1–2 years Nav1.6 gradually becomes the predominant channel type at the distal axon initial segment and axonal nodes of Ranvier as neurons mature. At this stage, Nav1.2 is restricted to the portion of the axon initial segment closest to the cell body [6] and in dendrites. [7] In mature neurons, Nav1.2 is distributed only throughout unmyelinated axons. [7] In contrast, its expression pattern in the cerebellum seems to persist throughout development, suggesting distinct roles for Nav1.2 in mature neurons of the neocortex and cerebellum. [6] When Nav1.6 takes over the initiation of action potentials, Nav1.2 might play a crucial role in driving their backpropagation into dendrites. This backpropagation could impact activity-dependent processes such as synaptic maturation, plasticity, and gene transcription. [6] [7]

The activity of Nav1.2 is influenced by several factors, such as protein-protein interactions, posttranslational modifications (e.g. phosphorylation), and changes in intracellular Ca2+ concentration. [7]

Clinical significance

Mutations in the SCN2A gene can cause a broad spectrum of disorders collectively referred to as SCN2A-related disorders. These include cases of autism, [6] self-limited epilepsy, early infantile developmental and epileptic encephalopathy, later onset developmental and epileptic encephalopathy, infantile spasms, SCN2A-related disorders without epilepsy, episodic ataxia, and further movement disorders. [7] Two major groups of SCN2A mutations can be distinguished based on their functional consequences and response to seizure medication: gain of function mutations, typically associated with seizure onset within the first three months of life, and loss of function mutations, in which seizures begin after the first three months or may never occur. The former group tends to benefit from treatment with sodium channel blockers, whereas in the latter, such treatment is often ineffective or may even exacerbate seizures. [11] Notably, SCN2A is known to be the most prominent genetic risk factor for autism-spectrum-disorders. [6]

SCN2A gene mutations have also been identified in bitemporal glucose hypometabolism, [12] and bipolar disorder. [13]

See also

References

  1. 1 2 3 GRCh38: Ensembl release 89: ENSG00000136531 Ensembl, May 2017
  2. 1 2 3 GRCm38: Ensembl release 89: ENSMUSG00000075318 Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. "Entrez Gene: SCN2A sodium channel, voltage-gated, type II, alpha subunit".
  6. 1 2 3 4 5 6 7 8 9 10 11 Sanders SJ, Murtha MT, Gupta AR, Murdoch JD, Raubeson MJ, Willsey AJ, et al. (April 2012). "De novo mutations revealed by whole-exome sequencing are strongly associated with autism". Nature. 485 (7397): 237–241. Bibcode:2012Natur.485..237S. doi:10.1038/nature10945. PMC   3667984 . PMID   22495306.
  7. 1 2 3 4 5 6 7 Abbott M, Bender KJ, Brunklaus A, Demarest S, Egan S, Haviland I, et al. (2024). George Jr AL (ed.). SCN2A-related disorders. Cambridge elements. Elements in genetics in epilepsy. Cambridge, United Kingdom New York, NY: Cambridge University Press. ISBN   978-1-009-53036-1.
  8. de Lera Ruiz M, Kraus RL (September 2015). "Voltage-Gated Sodium Channels: Structure, Function, Pharmacology, and Clinical Indications". Journal of Medicinal Chemistry. 58 (18): 7093–7118. doi:10.1021/jm501981g. PMID   25927480.
  9. Leterrier C, Brachet A, Fache MP, Dargent B (December 2010). "Voltage-gated sodium channel organization in neurons: protein interactions and trafficking pathways". Neuroscience Letters. Proteomics of Voltage-Gated Ion Channels. 486 (2): 92–100. doi:10.1016/j.neulet.2010.08.079. PMID   20817077.
  10. Catterall WA, Kalume F, Oakley JC (2010-05-28). "NaV1.1 channels and epilepsy". The Journal of Physiology. 588 (11): 1849–1859. doi:10.1113/jphysiol.2010.187484. ISSN   0022-3751.
  11. Wolff M, Johannesen KM, Hedrich UB, Masnada S, Rubboli G, Gardella E, et al. (2017-05-01). "Genetic and phenotypic heterogeneity suggest therapeutic implications in SCN2A-related disorders". Brain. 140 (5): 1316–1336. doi:10.1093/brain/awx054. ISSN   0006-8950.
  12. Sundaram SK, Chugani HT, Tiwari VN, Huq AH (July 2013). "SCN2A mutation is associated with infantile spasms and bitemporal glucose hypometabolism". Pediatric Neurology. 49 (1): 46–49. doi:10.1016/j.pediatrneurol.2013.03.002. PMC   3868437 . PMID   23827426.
  13. Stahl EA, Breen G, Forstner AJ, McQuillin A, Ripke S, Trubetskoy V, et al. (May 2019). "Genome-wide association study identifies 30 loci associated with bipolar disorder". Nature Genetics. 51 (5): 793–803. doi:10.1038/s41588-019-0397-8. PMC   6956732 . PMID   31043756.

Further reading

Patient advocacy organizations (PAO / PAG)

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

  1. "ICD-10-CM/PCS MS-DRG v43.0 Definitions Manual". Centers for Medicaid and Medicare Services. Retrieved October 15, 2025.