TRIOBP

TRIOBP
Identifiers
Aliases	TRIOBP , DFNB28, TAP68, TARA, dJ37E16.4, HRIHFB2122, TRIO and F-actin binding protein
External IDs	OMIM: 609761 MGI: 1349410 HomoloGene: 5104 GeneCards: TRIOBP
Gene location (Human) Chr. Chromosome 22 (human) [1] Band 22q13.1 Start 37,697,048 bp [1] End 37,776,556 bp [1]
Gene location (Mouse) Chr. Chromosome 15 (mouse) [2] Band 15 E1|15 37.7 cM Start 78,831,924 bp [2] End 78,890,069 bp [2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in lower lobe of lung right ventricle stromal cell of endometrium left uterine tube canal of the cervix right coronary artery parotid gland sural nerve myometrium left ventricle Top expressed in secondary oocyte triceps brachii muscle external carotid artery lip internal carotid artery yolk sac sternocleidomastoid muscle temporal muscle adrenal gland extraocular muscle More reference expression data BioGPS n/a
Gene ontology Molecular function actin filament binding actin binding ubiquitin protein ligase binding myosin II binding Cellular component focal adhesion microtubule organizing center nucleus cytoskeleton midbody actin cytoskeleton cytoplasm Biological process barbed-end actin filament capping regulation of actin cytoskeleton organization cell cycle cell division positive regulation of substrate adhesion-dependent cell spreading actin modification sensory perception of sound auditory receptor cell stereocilium organization Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 11078 110253 Ensembl ENSG00000100106 ENSMUSG00000033088 UniProt Q9H2D6 Q99KW3 RefSeq (mRNA) NM_138632 NM_001039141 NM_007032 NM_001024716 NM_001039155 NM_001039156 NM_138579 RefSeq (protein) NP_001034230 NP_008963 NP_619538 NP_001019887 NP_001034244 NP_001034245 NP_613045 Location (UCSC) Chr 22: 37.7 – 37.78 Mb Chr 15: 78.83 – 78.89 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

TRIO and F-actin-binding protein is a protein that in humans is encoded by the TRIOBP gene. ^{[5] [6] [7] [8]}

This gene encodes a protein that interacts with Trio, which is involved with neural tissue development and in controlling actin cytoskeleton organization, cell motility, and cell growth. This trio-binding protein also associates with F-actin and stabilizes F-actin structures. Domains contained in this encoded protein are an N-terminal pleckstrin homology domain and a C-terminal coiled-coil region. Mutations in this gene have been associated with a form of autosomal-recessive nonsyndromic deafness. Multiple alternatively-spliced transcript variants that would encode different isoforms have been found for this gene, though some transcripts may be subject to nonsense-mediated decay (NMD). ^[8]

References

1. GRCh38: Ensembl release 89: ENSG00000100106 - Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000033088 - Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Seipel K, O'Brien SP, Iannotti E, Medley QG, Streuli M (Jan 2001). "Tara, a novel F-actin binding protein, associates with the Trio guanine nucleotide exchange factor and regulates actin cytoskeletal organization". J Cell Sci. 114 (Pt 2): 389–99. doi:10.1242/jcs.114.2.389. PMID   11148140.
6. Riazuddin S, Khan SN, Ahmed ZM, Ghosh M, Caution K, Nazli S, Kabra M, Zafar AU, Chen K, Naz S, Antonellis A, Pavan WJ, Green ED, Wilcox ER, Friedman PL, Morell RJ, Riazuddin S, Friedman TB (Dec 2005). "Mutations in TRIOBP, which encodes a putative cytoskeletal-organizing protein, are associated with nonsyndromic recessive deafness". Am J Hum Genet. 78 (1): 137–43. doi:10.1086/499164. PMC   1380211 . PMID   16385457.
7. Shahin H, Walsh T, Sobe T, Abu Sa'ed J, Abu Rayan A, Lynch ED, Lee MK, Avraham KB, King MC, Kanaan M (Dec 2005). "Mutations in a novel isoform of TRIOBP that encodes a filamentous-actin binding protein are responsible for DFNB28 recessive nonsyndromic hearing loss". Am J Hum Genet. 78 (1): 144–52. doi:10.1086/499495. PMC   1380212 . PMID   16385458.
8. "Entrez Gene: TRIOBP TRIO and F-actin binding protein".

Further reading

• Nakajima D, Okazaki N, Yamakawa H, et al. (2003). "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones". DNA Res. 9 (3): 99–106. doi: 10.1093/dnares/9.3.99 . PMID   12168954.
• Mayer BJ, Ren R, Clark KL, Baltimore D (1993). "A putative modular domain present in diverse signaling proteins". Cell. 73 (4): 629–30. doi:10.1016/0092-8674(93)90244-K. PMID   8500161. S2CID   44282241.
• Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi: 10.1101/gr.6.9.791 . PMID   8889548.
• Ueki N, Oda T, Kondo M, et al. (1999). "Selection system for genes encoding nuclear-targeted proteins". Nat. Biotechnol. 16 (13): 1338–42. doi:10.1038/4315. PMID   9853615. S2CID   20001769.
• Dunham I, Shimizu N, Roe BA, et al. (1999). "The DNA sequence of human chromosome 22". Nature. 402 (6761): 489–95. Bibcode:1999Natur.402..489D. doi: 10.1038/990031 . PMID   10591208.
• Hartley JL, Temple GF, Brasch MA (2001). "DNA cloning using in vitro site-specific recombination". Genome Res. 10 (11): 1788–95. doi:10.1101/gr.143000. PMC   310948 . PMID   11076863.
• Hirosawa M, Nagase T, Murahashi Y, et al. (2001). "Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping". DNA Res. 8 (1): 1–9. doi: 10.1093/dnares/8.1.1 . PMID   11258795.
• Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi: 10.1073/pnas.242603899 . PMC   139241 . PMID   12477932.
• Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi: 10.1038/ng1285 . PMID   14702039.
• Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC   528928 . PMID   15489334.
• Wiemann S, Arlt D, Huber W, et al. (2004). "From ORFeome to biology: a functional genomics pipeline". Genome Res. 14 (10B): 2136–44. doi:10.1101/gr.2576704. PMC   528930 . PMID   15489336.
• Mehrle A, Rosenfelder H, Schupp I, et al. (2006). "The LIFEdb database in 2006". Nucleic Acids Res. 34 (Database issue): D415–8. doi:10.1093/nar/gkj139. PMC   1347501 . PMID   16381901.
• Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi: 10.1016/j.cell.2006.09.026 . PMID   17081983.
• Li X, Lan J, Zhu Y, et al. (2007). "Expression, purification, and characterization of Tara, a novel telomere repeat-binding factor 1 (TRF1)-binding protein". Protein Expr. Purif. 55 (1): 84–92. doi:10.1016/j.pep.2007.05.004. PMID   17629495.