COVID-19 datasets

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COVID-19 datasets are public databases for sharing case data and medical information related to the COVID-19 pandemic.

Contents

Aggregate statistics

United States

Volunteer/non-government

PublisherDate of first publicationIn official use?Update

Frequency

Geographic

Level

TimeseriesTesting

Sites

Testing

Number

CasesHospitalizationsDeathsVaccination

Sites

Vaccination

Number

Description
Coders Against COVID/GISCorps [1] March 22, 2020 [2] Yes, by FEMA [3] and State of California [4] DailyPoint (lat/long)YesYesNoNoNoNoYesNoA dataset of COVID-19 testing locations in the United States and Puerto Rico
USAFacts [5] April 24, 2020 [6] Yes, by CDC [7] DailyCountyYesNoNoYesYesNoNoA dataset of county-level coronavirus cases and deaths that is updated daily
COVID Tracking Project [8] March 7, 2020 [9] NoDailyStateYesNoYesYesYesYesNoNoA volunteer-run database of testing and medical stats in the United States
Sentiment Analysis of users reviews on COVID-19 contact tracing mobile applications [10] [11] March 2021This dataset is intended to support sentiment analysis of users' reviews on COVID-19 contact tracing mobile applications.

U.S. Department of Health & Human Services

NameGeographic

Level

TimeseriesTesting

Sites

Testing

Number

CasesHospitalizationsDeathsVaccination

Sites

Vaccination

Number

COVID-19 Diagnostic Laboratory Testing (PCR Testing) Time Series Archived 2021-03-12 at the Wayback Machine StateYesNoYesNoNoNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by Facility Archived 2021-03-12 at the Wayback Machine Point (lat/long)YesNoNoNoYesNoNoNo
COVID-19 Estimated Patient Impact and Hospital Capacity by State Archived 2021-03-12 at the Wayback Machine StateNoNoNoNoYesNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by State Archived 2021-03-08 at the Wayback Machine StateNoNoNoNoYesNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries Archived 2021-03-10 at the Wayback Machine StateYesNoNoNoYesNoNoNo

Global

Data hubs

Topic-specific and special-interest resources

Genomics

Imaging (Radiology)

Related Research Articles

<span class="mw-page-title-main">GISAID</span> Global initiative for sharing virus data

GISAID, the Global Initiative on Sharing All Influenza Data, previously the Global Initiative on Sharing Avian Influenza Data, is a global science initiative established in 2008 to provide access to genomic data of influenza viruses. The database was expanded to include the coronavirus responsible for the COVID-19 pandemic, as well as other pathogens. The database has been described as "the world's largest repository of COVID-19 sequences". GISAID facilitates genomic epidemiology and real-time surveillance to monitor the emergence of new COVID-19 viral strains across the planet.

<span class="mw-page-title-main">COVID-19 pandemic in Europe</span> Ongoing viral pandemic in Europe

The global COVID-19 pandemic arrived in Europe with its first confirmed case in Bordeaux, France, on 24 January 2020, and subsequently spread widely across the continent. By 17 March 2020, every country in Europe had confirmed a case, and all have reported at least one death, with the exception of Vatican City.

<span class="mw-page-title-main">COVID-19 pandemic in Asia</span> Ongoing COVID-19 viral pandemic in Asia

The COVID-19 pandemic began in Asia in Wuhan, Hubei, China, and has spread widely through the continent. As of 1 November 2023, at least one case of COVID-19 had been reported in every country in Asia except Turkmenistan.

<span class="mw-page-title-main">COVID-19 testing</span> Diagnostic testing for SARS-CoV-2 virus infection

COVID-19 testing involves analyzing samples to assess the current or past presence of SARS-CoV-2. The two main types of tests detect either the presence of the virus or antibodies produced in response to infection. Molecular tests for viral presence through its molecular components are used to diagnose individual cases and to allow public health authorities to trace and contain outbreaks. Antibody tests instead show whether someone once had the disease. They are less useful for diagnosing current infections because antibodies may not develop for weeks after infection. It is used to assess disease prevalence, which aids the estimation of the infection fatality rate.

<span class="mw-page-title-main">COVID-19 pandemic in North America</span> Ongoing COVID-19 viral pandemic in North America

The first cases of the COVID-19 pandemic of coronavirus disease 2019 in North America were reported in the United States on 23 January 2020. Cases were reported in all North American countries after Saint Kitts and Nevis confirmed a case on 25 March, and in all North American territories after Bonaire confirmed a case on 16 April.

<span class="mw-page-title-main">COVID-19 pandemic in Oceania</span> Ongoing COVID-19 pandemic in Oceania

The COVID-19 pandemic was confirmed to have reached Oceania on 25 January 2020 with the first confirmed case reported in Melbourne, Australia. The virus has spread to all sovereign states and territories in the region. Australia and New Zealand were praised for their handling of the pandemic in comparison to other Western nations, with New Zealand and each state in Australia wiping out all community transmission of the virus several times even after re-introduction in the community.

<span class="mw-page-title-main">COVID-19 pandemic in South America</span> Ongoing COVID-19 viral pandemic in South America

The COVID-19 pandemic was confirmed to have reached South America on 26 February 2020 when Brazil confirmed a case in São Paulo. By 3 April, all countries and territories in South America had recorded at least one case.

<span class="mw-page-title-main">COVID-19 pandemic in Ethiopia</span> Ongoing COVID-19 viral pandemic in Ethiopia

The COVID-19 pandemic in Ethiopia was a part of the ongoing worldwide pandemic of coronavirus disease 2019 caused by severe acute respiratory syndrome coronavirus 2. The virus was confirmed to have reached Ethiopia on 13 March 2020. The national government, led by Prime Minister Abiy Ahmed, declared a five-month state of emergency in April 2020 but has allowed economic activities to continue during the public health crisis.

The COVID-19 pandemic in Tuvalu is part of the ongoing worldwide pandemic of coronavirus disease 2019 caused by severe acute respiratory syndrome coronavirus 2. The virus was confirmed to have reached Tuvalu on 20 May 2022. As of 31 August 2022, a total of 25,591 vaccine doses have been administered.

<span class="mw-page-title-main">COVID-19 pandemic in Anguilla</span> Ongoing COVID-19 viral pandemic in Anguilla

The COVID-19 pandemic in Anguilla is part of the ongoing global viral pandemic of coronavirus disease 2019 (COVID-19), which was confirmed to have reached the British Overseas Territory of Anguilla on 26 March 2020. On 26 April 2020, all patients had recovered and on 22 November a new imported case was announced.

<span class="mw-page-title-main">COVID Tracking Project</span> Collaborative online project aimed at tracking COVID-19 in the United States

The COVID Tracking Project was a collaborative volunteer-run effort to track the ongoing COVID-19 pandemic in the United States. It maintained a daily-updated dataset of state-level information related to the outbreak, including counts of the number of cases, tests, hospitalizations, and deaths, the racial and ethnic demographic breakdowns of cases and deaths, and cases and deaths in long-term care facilities.

<span class="mw-page-title-main">NHS COVID-19</span> UK contact tracing app for COVID-19

NHS COVID-19 was a voluntary contact tracing app for monitoring the spread of the COVID-19 pandemic in England and Wales. It had been available since 24 September 2020 for Android and iOS smartphones, and can be used by anyone aged 16 or over.

<span class="mw-page-title-main">Statistics of the COVID-19 pandemic in the United States</span> Statistics relating to COVID-19 in the United States

The CDC publishes official numbers of COVID-19 cases in the United States. The CDC estimates that, between February 2020 and September 2021, only 1 in 1.3 COVID-19 deaths were attributed to COVID-19. The true COVID-19 death toll in the United States would therefore be higher than official reports, as modeled by a paper published in The Lancet Regional Health – Americas. One way to estimate COVID-19 deaths that includes unconfirmed cases is to use the excess mortality, which is the overall number of deaths that exceed what would normally be expected. From March 1, 2020, through the end of 2020, there were 522,368 excess deaths in the United States, or 22.9% more deaths than would have been expected in that time period.

<span class="mw-page-title-main">Variants of SARS-CoV-2</span> Notable variants of SARS-CoV-2

There are many variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes coronavirus disease 2019 (COVID-19). Some are believed, or have been stated, to be of particular importance due to their potential for increased transmissibility, increased virulence, or reduced effectiveness of vaccines against them. These variants contribute to the continuation of the COVID-19 pandemic.

Nextstrain is a collaboration between researchers in Seattle, United States and Basel, Switzerland which provides a collection of open-source tools for visualising the genetics behind the spread of viral outbreaks.

<span class="mw-page-title-main">SARS-CoV-2 variant of concern</span> Highly transmissible and virulent strains of SARS-CoV-2

The term variant of concern (VOC) for SARS-CoV-2, which causes COVID-19, is a category used for variants of the virus where mutations in their spike protein receptor binding domain (RBD) substantially increase binding affinity in RBD-hACE2 complex, while also being linked to rapid spread in human populations.

Software for COVID-19 pandemic mitigation takes many forms. It includes mobile apps for contact tracing and notifications about infection risks, vaccine passports, software for enabling – or improving the effectiveness of – lockdowns and social distancing, Web software for the creation of related information services, and research and development software. A common issue is that few apps interoperate, reducing their effectiveness.

<span class="mw-page-title-main">SARS-CoV-2 Theta variant</span> Variant of the SARS-CoV-2 virus

Theta variant, also known as lineage P.3, is one of the variants of SARS-CoV-2, the virus that causes COVID-19. The variant was first identified in the Philippines on February 18, 2021, when two mutations of concern were detected in Central Visayas. It was detected in Japan on March 12, 2021, when a traveler from the Philippines arrived at Narita International Airport in Tokyo.

<span class="mw-page-title-main">SARS-CoV-2 Epsilon variant</span> Variant of the SARS-Cov-2 virus

Epsilon variant, also known as CAL.20C and referring to two PANGO lineages B.1.427 and B.1.429, is one of the variants of SARS-CoV-2, the virus that causes COVID-19. It was first detected in California, USA in July 2020.

References

  1. ↑ Torpey, Holly; Caballero, M.D., Jorge A. (eds.). "COVID-19 Testing Sites Data". GISCorps/Coders Against COVID Testing Site Data. Retrieved 2020-12-14.
  2. ↑ "Volunteer group develops a COVID-19 testing location database for the U.S." TechCrunch. Retrieved 2021-02-03.[ permanent dead link ]
  3. ↑ "App of the Week: COVID-19 Testing Sites Locator". Federal Emergency Management Agency (FEMA). Retrieved 2021-02-03.
  4. ↑ "COVID-19 Testing Sites in California". www.arcgis.com. Retrieved 2021-02-03.
  5. ↑ "US Coronavirus Cases and Deaths". USAFacts.org. 2021-02-03. Retrieved 2021-02-03.
  6. ↑ "Detailed Methodology and Sources: COVID-19 Data". USAFacts. Retrieved 2021-02-03.
  7. ↑ "Coronavirus Outbreak Stats & Data". USAFacts. Retrieved 2021-02-03.
  8. ↑ Stephens, Autumn (21 August 2020). "Tracking Star in Oakland". Diablo Magazine. Retrieved 2020-09-18.
  9. ↑ "About Us". The COVID Tracking Project. Retrieved 2021-02-03.
  10. ↑ Ahmad, Kashif (2021). "A Benchmark Dataset for Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Applications". Harvard Dataverse. doi:10.7910/DVN/1RDRCM.{{cite journal}}: Cite journal requires |journal= (help)
  11. ↑ Ahmad, Kashif (2021). "Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Apps with a Benchmark Dataset". arXiv: 2103.01196 [cs.CL].
  12. ↑ "Home". Johns Hopkins Coronavirus Resource Center. Retrieved 2020-09-18.
  13. ↑ "WHO Coronavirus Disease (COVID-19) Dashboard". covid19.who.int. Retrieved 2020-09-18.
  14. ↑ "World Health Data Platform - WHO". www.who.int. Retrieved 2020-09-18.
  15. ↑ "COVID-19 Africa Open Data" . Retrieved 16 November 2020.
  16. ↑ "Open-Access Data and Computational Resources to Address COVID-19 | Data Science at NIH". datascience.nih.gov. Retrieved 2020-10-13.
  17. ↑ "CORD-19". Semantic Scholar. Retrieved 2020-10-13.
  18. ↑ "Analysis of COVID-19 publications identifies research gaps". EurekAlert!. Retrieved 2020-10-13.
  19. ↑ "Call to Action to the Tech Community on New Machine Readable COVID-19 Dataset". whitehouse.gov . Retrieved 2020-10-13– via National Archives.
  20. ↑ "NLM Leverages Data, Text Mining to Sharpen COVID-19 Research Databases". governmentciomedia.com. 11 May 2020. Retrieved 2020-10-13.
  21. ↑ "GISAID". www.gisaid.org. Retrieved 29 December 2020.
  22. ↑ "Nexstrain SARS-CoV-2 Dashboard". nextstrain.org. Retrieved 29 December 2020.
  23. ↑ "Nextstrain". docs.nextstrain.org. Retrieved 29 December 2020.
  24. ↑ Li Y, Xia L (March 2020). "Coronavirus Disease 2019 (COVID-19): Role of Chest CT in Diagnosis and Management". American Journal of Roentgenology. 214 (6): 1280–1286. doi:10.2214/AJR.20.22954. PMID   32130038. S2CID   212416282.
  25. ↑ "COVID-19 related projects". Mila. COVID-19 image data collection. Retrieved 12 July 2020.
  26. ↑ "COVID-19 image data collection". GitHub. Retrieved 12 July 2020.
  27. ↑ Cohen, Joseph (25 March 2020). "COVID-19 image data collection". arXiv: 2003.11597 [eess.IV].
  28. ↑ "BIMCV-COVID19, Datasets related to COVID19's pathology course". Medical Imaging Databank in Valencian Region Medical. Retrieved 12 July 2020.
  29. ↑ de la Iglesia Vayá, Maria (1 June 2020). "BIMCV COVID-19+: a large annotated dataset of RX and CT images from COVID-19 patients". arXiv: 2006.01174 [eess.IV].
  30. ↑ "COVID-19 Database". Società Italiana di Radiologia Medica e Interventistica (in Italian). Retrieved 2020-03-11.
  31. ↑ "Pneumothorax and pneumomediastinum: a rare complication in the evolution of COVID-19 pneumonia". Eurorad. Retrieved 12 July 2020.
  32. ↑ Bell, Daniel; Knipe, Henry. "COVID-19 (summary)". Radiopaedia. Retrieved 12 July 2020.
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