COVID-19 datasets

Last updated

COVID-19 datasets are public databases for sharing case data and medical information related to the COVID-19 pandemic.

Contents

Aggregate statistics

United States

Volunteer/non-government

PublisherDate of first publicationIn official use?Update

Frequency

Geographic

Level

TimeseriesTesting

Sites

Testing

Number

CasesHospitalizationsDeathsVaccination

Sites

Vaccination

Number

Description
Coders Against COVID/GISCorps [1] March 22, 2020 [2] Yes, by FEMA [3] and State of California [4] DailyPoint (lat/long)YesYesNoNoNoNoYesNoA dataset of COVID-19 testing locations in the United States and Puerto Rico
USAFacts [5] April 24, 2020 [6] Yes, by CDC [7] DailyCountyYesNoNoYesYesNoNoA dataset of county-level coronavirus cases and deaths that is updated daily
COVID Tracking Project [8] March 7, 2020 [9] NoDailyStateYesNoYesYesYesYesNoNoA volunteer-run database of testing and medical stats in the United States
Sentiment Analysis of users reviews on COVID-19 contact tracing mobile applications [10] [11] March 2021This dataset is intended to support sentiment analysis of users' reviews on COVID-19 contact tracing mobile applications.

U.S. Department of Health & Human Services

NameGeographic

Level

TimeseriesTesting

Sites

Testing

Number

CasesHospitalizationsDeathsVaccination

Sites

Vaccination

Number

COVID-19 Diagnostic Laboratory Testing (PCR Testing) Time Series Archived 2021-03-12 at the Wayback Machine StateYesNoYesNoNoNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by Facility Archived 2021-03-12 at the Wayback Machine Point (lat/long)YesNoNoNoYesNoNoNo
COVID-19 Estimated Patient Impact and Hospital Capacity by State Archived 2021-03-12 at the Wayback Machine StateNoNoNoNoYesNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by State Archived 2021-03-08 at the Wayback Machine StateNoNoNoNoYesNoNoNo
COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries Archived 2021-03-10 at the Wayback Machine StateYesNoNoNoYesNoNoNo

Global

Data hubs

Topic-specific and special-interest resources

Genomics

Imaging (Radiology)

References

  1. Torpey, Holly; Caballero, M.D., Jorge A. (eds.). "COVID-19 Testing Sites Data". GISCorps/Coders Against COVID Testing Site Data. Retrieved 2020-12-14.
  2. "Volunteer group develops a COVID-19 testing location database for the U.S." TechCrunch. 22 March 2020. Retrieved 2021-02-03.
  3. "App of the Week: COVID-19 Testing Sites Locator". Federal Emergency Management Agency (FEMA). Archived from the original on 2023-09-08. Retrieved 2021-02-03.
  4. "COVID-19 Testing Sites in California". www.arcgis.com. Retrieved 2021-02-03.
  5. "US Coronavirus Cases and Deaths". USAFacts.org. 2021-02-03. Retrieved 2021-02-03.
  6. "Detailed Methodology and Sources: COVID-19 Data". USAFacts. Retrieved 2021-02-03.
  7. "Coronavirus Outbreak Stats & Data". USAFacts. Retrieved 2021-02-03.
  8. Stephens, Autumn (21 August 2020). "Tracking Star in Oakland". Diablo Magazine. Retrieved 2020-09-18.
  9. "About Us". The COVID Tracking Project. Retrieved 2021-02-03.
  10. Ahmad, Kashif (2021). "A Benchmark Dataset for Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Applications". Harvard Dataverse. doi:10.7910/DVN/1RDRCM.{{cite journal}}: Cite journal requires |journal= (help)
  11. Ahmad, Kashif (2021). "Sentiment Analysis of Users' Reviews on COVID-19 Contact Tracing Apps with a Benchmark Dataset". arXiv: 2103.01196 [cs.CL].
  12. "Home". Johns Hopkins Coronavirus Resource Center. Retrieved 2020-09-18.
  13. "WHO Coronavirus Disease (COVID-19) Dashboard". covid19.who.int. Retrieved 2020-09-18.
  14. "World Health Data Platform - WHO". www.who.int. Retrieved 2020-09-18.
  15. "COVID-19 Africa Open Data" . Retrieved 16 November 2020.
  16. "Open-Access Data and Computational Resources to Address COVID-19 | Data Science at NIH". datascience.nih.gov. Retrieved 2020-10-13.
  17. "CORD-19". Semantic Scholar. Retrieved 2020-10-13.
  18. "Analysis of COVID-19 publications identifies research gaps". EurekAlert!. Archived from the original on 2021-01-01. Retrieved 2020-10-13.
  19. "Call to Action to the Tech Community on New Machine Readable COVID-19 Dataset". whitehouse.gov . Retrieved 2020-10-13 via National Archives.
  20. "NLM Leverages Data, Text Mining to Sharpen COVID-19 Research Databases". governmentciomedia.com. 11 May 2020. Retrieved 2020-10-13.
  21. "GISAID". www.gisaid.org. Retrieved 29 December 2020.
  22. "Nexstrain SARS-CoV-2 Dashboard". nextstrain.org. Retrieved 29 December 2020.
  23. "Nextstrain". docs.nextstrain.org. Retrieved 29 December 2020.
  24. Li Y, Xia L (March 2020). "Coronavirus Disease 2019 (COVID-19): Role of Chest CT in Diagnosis and Management". American Journal of Roentgenology. 214 (6): 1280–1286. doi: 10.2214/AJR.20.22954 . PMID   32130038. S2CID   212416282.
  25. "COVID-19 related projects". Mila. COVID-19 image data collection. Retrieved 12 July 2020.
  26. "COVID-19 image data collection". GitHub. Retrieved 12 July 2020.
  27. Cohen, Joseph (25 March 2020). "COVID-19 image data collection". arXiv: 2003.11597 [eess.IV].
  28. "BIMCV-COVID19, Datasets related to COVID19's pathology course". Medical Imaging Databank in Valencian Region Medical. Retrieved 12 July 2020.
  29. de la Iglesia Vayá, Maria (1 June 2020). "BIMCV COVID-19+: a large annotated dataset of RX and CT images from COVID-19 patients". arXiv: 2006.01174 [eess.IV].
  30. "COVID-19 Database". Società Italiana di Radiologia Medica e Interventistica (in Italian). Retrieved 2020-03-11.
  31. "Pneumothorax and pneumomediastinum: a rare complication in the evolution of COVID-19 pneumonia". Eurorad. Retrieved 12 July 2020.
  32. Bell, Daniel; Knipe, Henry. "COVID-19 (summary)". Radiopaedia. Retrieved 12 July 2020.