SARS-CoV-2 Mu variant

Last updated

The Mu variant, also known as lineage B.1.621 or VUI-21JUL-1, is one of the variants of SARS-CoV-2, the virus that causes COVID-19. It was first detected in Colombia in January 2021 and was designated by the WHO as a variant of interest on August 30, 2021. [1] The WHO said the variant has mutations that indicate a risk of resistance to the current vaccines and stressed that further studies were needed to better understand it. [2] [3] Outbreaks of the Mu variant were reported in South America and Europe. [4] The B.1.621 lineage has a sublineage, labeled B.1.621.1 under the PANGO nomenclature, which has already been detected in more than 20 countries worldwide. [5]

Contents

Under the simplified naming scheme proposed by the World Health Organization, B.1.621 was labeled "Mu variant", and was considered a variant of interest (VOI), but not a variant of concern. [1]

Classification

Naming

In January 2021, the lineage was first documented in Colombia and was named as lineage B.1.621. [6]

On July 1, 2021, Public Health England (PHE) named lineage B.1.621 VUI-21JUL-1. [7]

On August 30, 2021, the World Health Organization (WHO) named lineage B.1.621 Mu variant. [1]

Mutations

The Mu genome has a total number of 21 mutations, including 9 amino acid mutations, all of which are in the virus's spike protein code: T95I, Y144S, Y145N, R346K, E484K or the escape mutation, N501Y, D614G, P681H, and D950N. [8] It has an insertion of one amino acid at position 144/145 of the spike protein, giving a total mutation YY144–145TSN. That mutation is conventionally notated as Y144S and Y145N because insertions would break a lot of comparison tools. It also features a frame-shift deletion of four nucleotides in ORF3a that generates a stop codon two amino acids. The mutation is labeled as V256I, N257Q, and P258*. The list of defining mutations are: S: T95I, Y144S, Y145N, R346K, E484K, N501Y, D614G, P681H, and D950N; ORF1a: T1055A, T1538I, T3255I, Q3729R; ORF1b: P314L, P1342S; N: T205I, ORF3a: Q57H, V256I, N257Q, P258*; ORF8: T11K, P38S, S67F. [9] Mutations in viruses are not new. All viruses, including SARS-CoV-2, undergo change over time. Most of these changes are inconsequential, but some can alter properties to make these viruses more virulent or escape the treatment or vaccines. [4]

On August 31, 2021, the WHO released an update which stated that the "Mu variant has a constellation of mutations that indicate potential properties of immune escape", noting that preliminary studies showed some signs of this but that "this needs to be confirmed by further studies." [10]

One such study conducted in a lab in Rome tested the effectiveness of sera collected from recipients of the BioNTech-Pfizer vaccine against the Mu variant, and found that "neutralization of SARS-CoV-2 B.1.621 lineage was robust", albeit at a lower level than that observed against the B.1 variant. [11]

Characteristic mutations of Mu Variant [8]
Gene Amino acid
ORF1a T1055A
T1538I
T3255I
Q3729R
ORF1b P314L
P1342S
S T95I
Y144S
Y145N
R346K
E484K
N501Y
D614G
P681H
D950N
ORF3a Q57H
del257/257
ORF8 T11K
P38S
S67F
N T205I

History

August 2021

August 6:

August 30:

September 2021

September 2:

September 3:

September 4:

September 7:

September 8:

September 9:

September 16:

September 18:

Statistics

Confirmed cases by country (as of November 3, 2023)
Country GISAID [36] outbreak.info [8] other sources
Flag of the United States.svg USA5,5506,550
Flag of Colombia.svg Colombia3,9954,974
Flag of Chile.svg Chile850958
Flag of Spain.svg Spain665690
Flag of Ecuador.svg Ecuador352447
Flag of Mexico.svg Mexico345435
Flag of Peru.svg Peru24027686 [22]
Flag of Canada (Pantone).svg Canada142162
Flag of the Dominican Republic.svg Dominican Republic115118
Flag of Aruba.svg Aruba9494
Flag of Italy.svg Italy8285
Flag of the Netherlands.svg Netherlands767646 [37]
Flag of Costa Rica.svg Costa Rica7374
Flag of the United Kingdom.svg United Kingdom716759 [38]
Flag of Puerto Rico.svg Puerto Rico5757
Flag of Belgium (civil).svg Belgium5151
Flag of Austria.svg Austria4949
Flag of Switzerland (Pantone).svg  Switzerland4848
Flag of Argentina.svg Argentina41421 [30]
Flag of the British Virgin Islands.svg British Virgin Islands4141
Flag of Jamaica.svg Jamaica333326 [27]
Flag of France.svg France2928
Flag of Mongolia.svg Mongolia2020
Flag of Portugal.svg Portugal2025
Flag of Curacao.svg Curacao1920
Flag of Brazil.svg Brazil172112 [31] [32] [33] [34]
Flag of Panama.svg Panama1616
Flag of Germany.svg Germany1516
Flag of Venezuela.svg Venezuela1515
Flag of Denmark.svg Denmark1112
Bandera de Bolivia (Estado).svg Bolivia1010
Flag of Bonaire.svg Bonaire810
Flag of Poland.svg Poland88
Flag of Finland.svg Finland551 [35]
Flag of Haiti.svg Haiti56
Flag of Japan.svg Japan552 [14]
Flag of the United States Virgin Islands.svg U.S. Virgin Islands551 [24]
Flag of Ireland.svg Ireland444 [21]
Flag of Slovakia.svg Slovakia44
Flag of Sweden.svg Sweden44
Flag of Guatemala.svg Guatemala342 [16]
Flag of Hong Kong.svg Hong Kong333 [19]
Flag of Luxembourg.svg Luxembourg33
Flag of the Cayman Islands.svg Cayman Islands23
Flag of Israel.svg Israel22
Flag of Saint Vincent and the Grenadines.svg Saint Vincent and the Grenadines235 [26]
Flag of Sint Maarten.svg Sint Maarten23
Flag of Turkey.svg Turkey222 [25]
Flag of Barbados.svg Barbados11
Flag of the Czech Republic.svg Czech Republic11
Flag of Gibraltar.svg Gibraltar11
Flag of Liechtenstein.svg Liechtenstein11
Flag of Lithuania.svg Lithuania11
Flag of Malta.svg Malta11
Flag of Morocco.svg Morocco11
Flag of South Korea.svg South Korea113 [20]
Flag of the Turks and Caicos Islands.svg Turks and Caicos Islands11
Flag of Romania.svg Romania11
Flag of Greece.svg Greece116 [18]
Flag of the Republic of China.svg Taiwan111 [15]
 Total12,95215,090260

See also

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References

  1. 1 2 3 "Tracking SARS-CoV-2 variants". who.int. World Health Organization. Archived from the original on June 18, 2021. Retrieved September 1, 2021.
  2. "WHO monitoring new coronavirus variant named 'Mu'". france24.com. September 1, 2021. Archived from the original on September 1, 2021. Retrieved September 1, 2021.
  3. O'Neill, Luke (3 September 2021). "Mu: everything you need to know about the new coronavirus variant of interest". The Conversation. Retrieved 2021-09-03.
  4. 1 2 "Why Has WHO Designated 'Mu' A Variant Of Concern? Find Out All About It". ndtv.com. September 1, 2021. Archived from the original on September 1, 2021. Retrieved September 1, 2021.
  5. "Lineage B.1.621.1". cov-lineages.org. Archived from the original on August 31, 2021. Retrieved September 1, 2021.
  6. "Mu COVID variant: All you need to know about the new UK coronavirus strain". BBC Science Focus Magazine. Archived from the original on 2021-09-01. Retrieved 2021-09-01.
  7. "Variants: distribution of cases data". gov.uk . Government Digital Service. Archived from the original on June 7, 2021. Retrieved September 1, 2021.
  8. 1 2 3 "Mu Lineage Report". outbreak.info. Archived from the original on September 1, 2021. Retrieved September 1, 2021.
  9. "Variant: 21H (Mu)". covariants.org. Retrieved September 16, 2021.
  10. "Weekly epidemiological update on COVID-19 - 31 August 2021". who.int. World Health Organization. August 31, 2021. Retrieved 2021-09-08.
  11. Messali, Serena; Bertelli, Anna; Campisi, Giovanni; Zani, Alberto; Ciccozzi, Massimo; Caruso, Arnaldo; Caccuri, Francesca (2021-07-30). "A cluster of the new SARS-CoV-2 B.1.621 lineage in Italy and sensitivity of the viral isolate to the BNT162b2 vaccine". Journal of Medical Virology. 93 (12): 6468–6470. doi: 10.1002/jmv.27247 . PMC   8426698 . PMID   34329486.
  12. "SARS-CoV-2 variants - Stanford Coronavirus Antiviral & Resistance Database". covdb.stanford.edu. Stanford University Coronavirus Antiviral & Resistance Database. Archived from the original on June 30, 2021. Retrieved September 1, 2021.
  13. "Seven residents of Belgian nursing home die after outbreak of B.1.621 lineage of COVID-19". reuters.com. August 6, 2021. Archived from the original on August 7, 2021. Retrieved September 8, 2021.
  14. 1 2 "Japan confirms first cases of mu variant of COVID-19". thebharatexpressnews.com. September 2, 2021. Archived from the original on September 2, 2021. Retrieved September 2, 2021.
  15. 1 2 "Taiwan reports its 1st imported case of Mu COVID variant". Taiwan News. September 3, 2021. Retrieved September 3, 2021.
  16. 1 2 "The "MU" variant is already in Guatemala. Is it immune to vaccines?". bullfrag.com. 4 September 2021. Retrieved September 4, 2021.
  17. "What we know about the mu variant". Newspapers.com. Richmond Times-Dispatch. Washington Post. 5 September 2021. p. B2. Retrieved 2 March 2023.
  18. 1 2 "Κορονοϊός - Μετάλλαξη Mu: Έξι κρούσματα στην Ελλάδα - Πού εντοπίστηκαν". ethnos.gr (in Greek). January 1980. Retrieved September 3, 2021.
  19. 1 2 "Coronavirus: three cases of new Mu variant found in Hong Kong arrivals, authorities reveal". South China Morning Post. 3 September 2021. Retrieved September 3, 2021.
  20. 1 2 "3 Mu variant cases detected in South Korea". malaysianow.com. September 3, 2021. Retrieved September 4, 2021.
  21. 1 2 Neville, Steve (4 September 2021). "Four Covid cases associated with Mu variant identified in Ireland". Irish Examiner . Retrieved 5 September 2021.
  22. 1 2 "Variante Mu en Perú: ¿en qué regiones se han detectado los 86 casos registrados hasta hoy?". gestion.pe (in Spanish). Gestion Peru. September 4, 2021. Retrieved September 12, 2021.
  23. "Mu COVID-19 variant detected in USVI". caribbean.loopnews. September 8, 2021. Retrieved September 8, 2021.
  24. 1 2 "Mu Variant of Covid-19 Confirmed in USVI". viconsortium.com. The Virgin Islands Consortium. September 8, 2021. Retrieved September 8, 2021.
  25. 1 2 "Turkey confirms first cases of coronavirus Mu variant". aa.com.tr. September 7, 2021. Retrieved September 26, 2021.
  26. 1 2 "St Vincent and the Grenadines detects five cases of the Mu variant". caribbean.loopnews. September 8, 2021. Retrieved September 8, 2021.
  27. 1 2 "'Mu' variant of COVID-19 confirmed in Jamaica". radiojamaicanewsonline.com. September 9, 2021. Retrieved September 10, 2021.
  28. "Health Ministry Confirms Mu Variant of Covid-19 Is in Jamaica". Nationwide 90FM. September 9, 2021. Retrieved September 10, 2021.
  29. "Mu variant of COVID-19 confirmed in Jamaica". jamaica-gleaner.com. September 9, 2021. Retrieved September 10, 2021.
  30. 1 2 "Coronavirus. Detectan el primer caso de la variante mu en el país: una mujer vacunada con dos dosis". lanacion.com.ar (in Spanish). LA NACION. 11 September 2021. Retrieved 11 September 2021.
  31. 1 2 "Rio de Janeiro tem primeiro caso confirmado da variante Mu" (in Portuguese). CNN Brasil. September 16, 2021. Retrieved September 16, 2021.
  32. 1 2 "Ceará registra os dois primeiros casos da variante Mu em mulheres que viajaram à Colômbia". globo.com (in Portuguese). September 16, 2021. Retrieved September 16, 2021.
  33. 1 2 "Secretário sobre variante Mu: 'Provavelmente, há transmissão comunitária'". em.com.br (in Portuguese). September 16, 2021. Retrieved September 16, 2021.
  34. 1 2 "Covid-19: Amazonas confirma 2 casos da variante mu..." poder360.com.br (in Portuguese). Poder360. September 16, 2021. Retrieved September 16, 2021.
  35. 1 2 "Finland sees first cases of Covid variant Mu". YLE . YLE Uutiset. September 18, 2021. Retrieved September 25, 2021.
  36. "Tracking of Variants". gisaid.org. Retrieved September 5, 2021.
  37. "Variants of the coronavirus SARS-CoV-2". rivm.nl. Retrieved September 4, 2021.
  38. "Variants: distribution of case data, 23 December 2021". gov.uk. Government Digital Service. Retrieved December 16, 2021.