Zinc finger transcription factor

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Zinc finger transcription factors or ZF-TFs, are transcription factors composed of a zinc finger-binding domain and any of a variety of transcription-factor effector-domains that exert their modulatory effect in the vicinity of any sequence to which the protein domain binds. [1]

Contents

Besides the presence of additional domains that regulate their activity, such as the predominantly found KRAB domains, the mechanism by which zinc finger transcription factors activate transcription remains unknown. Recently, it was shown that a complex called Zincore, Zinc finger co-regulator [2] , can bind directly to the DNA-binding domain of zinc finger proteins, shedding light on how zinc finger transcription factors can activate transcription [2] .

Zinc finger protein transcription factors can be encoded by genes small enough to fit a number of such genes into a single vector, allowing the medical intervention and control of expression of multiple genes and the initiation of an elaborate cascade of events. In this respect, it is also possible to target a sequence that is common to multiple (usually functionally related) genes to control the transcription of all these genes with a single transcription factor. Additionally, a group of related genes can be targeted by modulating the expression of the endogenous transcription factor(s) that regulate them. They also have the advantage that the targeted sequence need not be symmetrical unlike most other DNA-binding motifs based on natural transcription factors that bind as dimers. [1]

Applications

By targeting the ZF-TF toward a specific DNA sequence and attaching the necessary effector domain, it is possible to downregulate or upregulate the expression of the gene(s) in question while using the same DNA-binding domain. [3] The expression of a gene can also be downregulated by blocking elongation by RNA polymerase (without the need for an effector domain) in the coding region or RNA itself can also be targeted. [1] [4] In addition to their clear role in advancing gene function research, engineered ZF-TFs also hold therapeutic potential, including the ability to correct abnormal gene expression profiles (e.g., erbB-2 overexpression in human adenocarcinomas) [5] [6] and anti-retrovirals (e.g. HIV-1 [7] ).

Thalidomide analogs, in combination with the E3 ligase Cereblon (CRBN), represent a new class of potential therapeutics for selectively degrading C2H2 zinc finger transcription factors [8] . These compounds enable CRBN to bind multiple zinc finger proteins and promote their ubiquitination and proteasomal degradation, offering a strategy to target transcription factors previously considered 'undruggable' [8] [9] .

See also

References

  1. 1 2 3 Gommans WM, Haisma HJ, Rots MG (2005). "Engineering zinc finger protein transcription factors: the therapeutic relevance of switching endogenous gene expression on or off at command" (PDF). J. Mol. Biol. 354 (3): 507–19. doi:10.1016/j.jmb.2005.06.082. PMID   16253273.
  2. 1 2 Bianchi, Daniëlle; Borza, Razvan; De Zan, Erica; Huelsz-Prince, Guizela; Gregoricchio, Sebastian; Dekker, Marleen; Fish, Alex; Mazouzi, Abdelghani; Kroese, Lona J.; Linder, Simon; Hernandez-Quiles, Miguel; Vermeulen, Michiel; Celie, Patrick H. N.; Krimpenfort, Paul; Song, Ji-Ying (2025-07-03). "Zincore, an atypical coregulator, binds zinc finger transcription factors to control gene expression". Science. 389 (6755) eadv2861. doi:10.1126/science.adv2861.
  3. Beerli R, Barbas CF (2002). "Engineering polydactyl zinc-finger transcription factors". Nature Biotechnology. 20 (2): 135–141. doi:10.1038/nbt0202-135. PMID   11821858. S2CID   12685879.
  4. Wu H, Yang WP, Barbas CF (1995). "Building zinc fingers by selection: toward a therapeutic application". Proc. Natl. Acad. Sci. U.S.A. 92 (2): 344–8. Bibcode:1995PNAS...92..344W. doi: 10.1073/pnas.92.2.344 . PMC   42736 . PMID   7831288.
  5. Beerli RR, Dreier B, Barbas CF (2000). "Positive and negative regulation of endogenous genes by designed transcription factors". Proc. Natl. Acad. Sci. U.S.A. 97 (4): 1495–500. Bibcode:2000PNAS...97.1495B. doi: 10.1073/pnas.040552697 . PMC   26462 . PMID   10660690.
  6. Beerli RR, Segal DJ, Dreier B, Barbas CF (1998). "Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks". Proc. Natl. Acad. Sci. U.S.A. 95 (25): 14628–33. Bibcode:1998PNAS...9514628B. doi: 10.1073/pnas.95.25.14628 . PMC   24500 . PMID   9843940.
  7. Segal DJ, Gonçalves J, Eberhardy S, et al. (2004). "Attenuation of HIV-1 replication in primary human cells with a designed zinc finger transcription factor". J. Biol. Chem. 279 (15): 14509–19. doi: 10.1074/jbc.M400349200 . PMID   14734553.
  8. 1 2 Sievers, Quinlan L.; Petzold, Georg; Bunker, Richard D.; Renneville, Aline; Słabicki, Mikołaj; Liddicoat, Brian J.; Abdulrahman, Wassim; Mikkelsen, Tarjei; Ebert, Benjamin L.; Thomä, Nicolas H. (2018-11-02). "Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN". Science. 362 (6414) eaat0572. doi:10.1126/science.aat0572. PMC   6326779 . PMID   30385546.
  9. Słabicki, Mikołaj; Park, Jiho; Nowak, Radosław P.; Burman, Shourya S. Roy; Pellman, Jesse; Zou, Charles; Razumkov, Hlib; Carreiro, Jeannie; Rastogi, Simran; Goldstein, Anna; Nagiec, Marek M.; Donovan, Katherine A.; Che, Jianwei; Hunkeler, Moritz; Geng, Qixiang (2025-08-21). "Expanding the druggable zinc-finger proteome defines properties of drug-induced degradation". Molecular Cell. 85 (16): 3184–3201.e14. doi:10.1016/j.molcel.2025.07.019. ISSN   1097-2765. PMID   40845806.